Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/ed5e6e86877a006e136d88a45ef91280c0e1c025content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library ed5e6e86877a006e136d88a45ef91280c0e1c025
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: ed5e6e86877a006e136d88a45ef91280c0e1c025
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2479_A08
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TGGTAAACACACAATT-2479_A08, TTCAGCACAATAACCT-2479_A08, TTTCACCCATTGTGGC-2479_A08, GGTTGCGGTGCGCGTA-2479_A08, ATCTATGAGGTCCGTA-2479_A08 (top 5 of 3921 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
212,604,041
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 212604041
chr1 19006423
chr2 16743106
chr3 13913289
chr4 10964823
chr5 11631454
chr6 11863480
chr7 11470090
chr8 9584312
chr9 8949540
chr10 9944828
chr11 11385135
chr12 10439056
chr13 5770646
chr14 7213570
chr15 6619702
chr16 7777571
chr17 9307016
chr18 4870944
chr19 7954135
chr20 5560385
chr21 2479638
chr22 4411361
chrX 4391009
chrY 312482
GL000009.2 1145
GL000194.1 3488
GL000195.1 3814
GL000205.2 9604
GL000213.1 6
GL000218.1 4026
GL000219.1 12225
KI270711.1 563
KI270713.1 3497
KI270721.1 157
KI270726.1 20
KI270727.1 170
KI270728.1 427
KI270731.1 99
KI270734.1 805

Fragment lengths

fragments min max mean median
fragments 212604041 1 5036 208.55 170
global fragment-length histogram

Files

Filename Size md5
ed5e6e86877a006e136d88a45ef91280c0e1c025.gz 1.99 GB bc4355b29539818ff643539c9b5a5208
ed5e6e86877a006e136d88a45ef91280c0e1c025.gz.tbi 1.03 MB f95aae876a55646fd5e66d81671a5a69
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 8887995235cb27543a55dfcdd21d9f6c
statistics/