Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/ed85f8bc13e2abf1c7305bc289f4687f8f600332content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library ed85f8bc13e2abf1c7305bc289f4687f8f600332
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: ed85f8bc13e2abf1c7305bc289f4687f8f600332
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 853_B07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGAACTAAGGCTGTCA-853_B07, GAGGCCTTCCGCCTCA-853_B07, TAGCAGGCAACTAGAA-853_B07, TGGACAAAGTTATCCT-853_B07, AGCGCCTAGCATTATG-853_B07 (top 5 of 2520 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
154,099,959
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 154099959
chr1 13948116
chr2 11769219
chr3 9780220
chr4 7661730
chr5 8309026
chr6 8674335
chr7 7860363
chr8 6863420
chr9 6577722
chr10 7295582
chr11 8195677
chr12 7391277
chr13 4101788
chr14 5125625
chr15 4712393
chr16 5568836
chr17 7186491
chr18 3451278
chr19 6258093
chr20 4003636
chr21 1807018
chr22 3221027
chrX 4278993
chrY 13924
GL000009.2 1308
GL000194.1 2949
GL000195.1 6148
GL000205.2 10352
GL000213.1 95
GL000218.1 2245
GL000219.1 12102
KI270711.1 431
KI270713.1 3557
KI270721.1 78
KI270726.1 148
KI270727.1 299
KI270728.1 3911
KI270731.1 147
KI270734.1 400

Fragment lengths

fragments min max mean median
fragments 154099959 1 5041 186.55 163
global fragment-length histogram

Files

Filename Size md5
ed85f8bc13e2abf1c7305bc289f4687f8f600332.gz 1.37 GB 93e9cdbcaa9bf263d3878fcfeaeb63ee
ed85f8bc13e2abf1c7305bc289f4687f8f600332.gz.tbi 891.09 KB 4e88a8e1350ceb193d466ee549180929
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB e4d1c2e27836af7df90039637a622bf0
statistics/