Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/eee22f2599f81ad166aee7f7edac2bbc48a206e0content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library eee22f2599f81ad166aee7f7edac2bbc48a206e0
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: eee22f2599f81ad166aee7f7edac2bbc48a206e0
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2530_B02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ATGACGAAGCTGGACC-2530_B02, GGACATAAGCAACATC-2530_B02, TTGGGCCAGACAAACG-2530_B02, GTTACTAAGCCTGTTC-2530_B02, TTAAGGTGTTGCAATG-2530_B02 (top 5 of 3189 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
227,479,032
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 227479032
chr1 20027279
chr2 17953040
chr3 15243678
chr4 12163608
chr5 12752544
chr6 12622511
chr7 12291077
chr8 10351064
chr9 9342146
chr10 10592028
chr11 11875573
chr12 11135407
chr13 6383032
chr14 7556975
chr15 7062561
chr16 8144632
chr17 9438351
chr18 5308926
chr19 7945792
chr20 5844659
chr21 2709983
chr22 4565350
chrX 6108494
chrY 14997
GL000009.2 1450
GL000194.1 4373
GL000195.1 4205
GL000205.2 11828
GL000213.1 179
GL000218.1 2940
GL000219.1 13093
KI270711.1 543
KI270713.1 2994
KI270721.1 170
KI270726.1 9
KI270727.1 767
KI270728.1 2030
KI270731.1 182
KI270734.1 562

Fragment lengths

fragments min max mean median
fragments 227479032 1 5038 197.51 167
global fragment-length histogram

Files

Filename Size md5
eee22f2599f81ad166aee7f7edac2bbc48a206e0.gz 2.13 GB 5bb427f3417fa9214691d3d1a20ddc47
eee22f2599f81ad166aee7f7edac2bbc48a206e0.gz.tbi 1.09 MB 8361810f527a339a8ab17b87fb8d1108
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB eb71eee6cfd067fb35678d00241bde35
statistics/