Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/efb22b586b870994a08b60e0547ee50c94649a3fcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library efb22b586b870994a08b60e0547ee50c94649a3f
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: efb22b586b870994a08b60e0547ee50c94649a3f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 1110_A07
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCCGTAAAGTTGGCCA-1110_A07, GGGTCAACATTATGCG-1110_A07, GGTCTTTGTTAGGCTA-1110_A07, CGCTCCATCGCACAAT-1110_A07, CGACCTGCAGGTCCTG-1110_A07 (top 5 of 1056 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
24,989,797
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 24989797
chr1 2211049
chr2 1981142
chr3 1632666
chr4 1305926
chr5 1377191
chr6 1400885
chr7 1323032
chr8 1153051
chr9 1036926
chr10 1154700
chr11 1303912
chr12 1229380
chr13 695345
chr14 835061
chr15 778743
chr16 888799
chr17 1052867
chr18 578282
chr19 910408
chr20 663325
chr21 295223
chr22 500331
chrX 673084
chrY 1776
GL000009.2 208
GL000194.1 547
GL000195.1 831
GL000205.2 1455
GL000213.1 13
GL000218.1 419
GL000219.1 2111
KI270711.1 70
KI270713.1 425
KI270721.1 14
KI270726.1 24
KI270727.1 43
KI270728.1 444
KI270731.1 36
KI270734.1 53

Fragment lengths

fragments min max mean median
fragments 24989797 1 5037 202.67 167
global fragment-length histogram

Files

Filename Size md5
efb22b586b870994a08b60e0547ee50c94649a3f.gz 241.85 MB 2531b02ff4111c156ebfefe60ed1fe0d
efb22b586b870994a08b60e0547ee50c94649a3f.gz.tbi 557.9 KB d65f997969e4162a839d02f28b75cdf2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB dd56b26f322592315e1ef034b33b23ee
statistics/