Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f34447476e7d1f4efb3a65a7b847b8d1e640d087content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library f34447476e7d1f4efb3a65a7b847b8d1e640d087
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f34447476e7d1f4efb3a65a7b847b8d1e640d087
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2263_E01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCTTCAATCTTAGTCT-2263_E01, TACTTGTTCCCGCCTA-2263_E01, GTTAACGGTCCTTAGT-2263_E01, AGTCCTTGTTCGGTAA-2263_E01, CAAAGTGAGCCAGTAT-2263_E01 (top 5 of 3532 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
151,618,637
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 151618637
chr1 13736267
chr2 11812969
chr3 9606319
chr4 7313900
chr5 8075136
chr6 8260528
chr7 7809551
chr8 6671653
chr9 6658078
chr10 7142203
chr11 8158548
chr12 7213497
chr13 4003174
chr14 5117485
chr15 4752596
chr16 5645170
chr17 6972494
chr18 3390599
chr19 6100704
chr20 4077968
chr21 1804690
chr22 3242642
chrX 4006555
chrY 11719
GL000009.2 900
GL000194.1 5204
GL000195.1 5869
GL000205.2 8559
GL000213.1 107
GL000218.1 1420
GL000219.1 6466
KI270711.1 375
KI270713.1 2434
KI270721.1 222
KI270726.1 17
KI270727.1 513
KI270728.1 1669
KI270731.1 200
KI270734.1 237

Fragment lengths

fragments min max mean median
fragments 151618637 1 5020 155.42 142
global fragment-length histogram

Files

Filename Size md5
f34447476e7d1f4efb3a65a7b847b8d1e640d087.gz 1.41 GB a1b7caf8a5b393b6a69f29bc98780f57
f34447476e7d1f4efb3a65a7b847b8d1e640d087.gz.tbi 900.07 KB 2b3b05ba1da000edd3eb7a9b8129281d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB b29ab039ddd610f0c4465a5453e03d65
statistics/