Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f35624a2912fde5ba50f4821349e6e9667587871content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library f35624a2912fde5ba50f4821349e6e9667587871
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f35624a2912fde5ba50f4821349e6e9667587871
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2018_E01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TACCAAATCTCACATT-2018_E01, TTAGGCCCATGGCCCA-2018_E01, GTGTAACTCGGTTTCC-2018_E01, TTGAGGCGTAGTTGGC-2018_E01, TTGCCCGTCTTGGATA-2018_E01 (top 5 of 5503 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
241,838,678
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 241838678
chr1 21549353
chr2 18702216
chr3 15493204
chr4 12400682
chr5 13375832
chr6 13331515
chr7 12694692
chr8 11027075
chr9 10274833
chr10 11225540
chr11 12810116
chr12 11774789
chr13 6638091
chr14 8231487
chr15 7496552
chr16 9029612
chr17 10716981
chr18 5509511
chr19 9535371
chr20 6385444
chr21 2988891
chr22 5071761
chrX 5143229
chrY 375163
GL000009.2 1454
GL000194.1 7298
GL000195.1 8823
GL000205.2 16011
GL000213.1 33
GL000218.1 2179
GL000219.1 7725
KI270711.1 249
KI270713.1 6944
KI270721.1 301
KI270726.1 242
KI270727.1 635
KI270728.1 3959
KI270731.1 130
KI270734.1 755

Fragment lengths

fragments min max mean median
fragments 241838678 1 5037 159.45 142
global fragment-length histogram

Files

Filename Size md5
f35624a2912fde5ba50f4821349e6e9667587871.gz 2.27 GB 05befeff0630d6802426905ddfd6e5f2
f35624a2912fde5ba50f4821349e6e9667587871.gz.tbi 1.15 MB 5e89d50f8115eaad9669a47e3ed64a34
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 92489aba338f14f133cdbced6faa9054
statistics/