Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f5d68824352c7c288af60887b276e5520e6f62cecontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library f5d68824352c7c288af60887b276e5520e6f62ce
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f5d68824352c7c288af60887b276e5520e6f62ce
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2326_F01
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TTCCTTCTCGCTAGTG-2326_F01, ATATGCTCATTGTGGC-2326_F01, TGAGGAGGTGGGTGAA-2326_F01, GCGAAGCCACCAAAGG-2326_F01, TCAGGTTAGGCAGGTG-2326_F01 (top 5 of 4252 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
229,921,958
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 229921958
chr1 20095435
chr2 18242433
chr3 15117706
chr4 12374523
chr5 13039922
chr6 12861402
chr7 12263039
chr8 10804071
chr9 9511182
chr10 10699115
chr11 11955538
chr12 11173728
chr13 6550633
chr14 7665714
chr15 6843872
chr16 7917401
chr17 9376444
chr18 5527160
chr19 7972946
chr20 5964429
chr21 2698074
chr22 4368298
chrX 6821543
chrY 19752
GL000009.2 797
GL000194.1 4726
GL000195.1 5675
GL000205.2 14548
GL000213.1 60
GL000218.1 3424
GL000219.1 18719
KI270711.1 529
KI270713.1 1945
KI270721.1 104
KI270726.1 7
KI270727.1 392
KI270728.1 6138
KI270731.1 143
KI270734.1 391

Fragment lengths

fragments min max mean median
fragments 229921958 1 5045 179.27 160
global fragment-length histogram

Files

Filename Size md5
f5d68824352c7c288af60887b276e5520e6f62ce.gz 2.16 GB efb70833279d6a607c0da2bf26471f93
f5d68824352c7c288af60887b276e5520e6f62ce.gz.tbi 1.14 MB 3dbabfc9855bb45304e157983e1c18f0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 119de30e74abdf48234d443742c8c97c
statistics/