Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f68c1dfd5f514a92d83a781e1db3debe8ec2c235content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library f68c1dfd5f514a92d83a781e1db3debe8ec2c235
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f68c1dfd5f514a92d83a781e1db3debe8ec2c235
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2389_A04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell ACAGGATCATCATGGC-2389_A04, TAGCGGCTCTCCATAT-2389_A04, CATGGATTCGAAGTGA-2389_A04, CAGGGCTTCAACAAGG-2389_A04, GTTACGCCACTTCATC-2389_A04 (top 5 of 2786 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
102,568,511
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 102568511
chr1 9509837
chr2 7778704
chr3 6286591
chr4 4857616
chr5 5347815
chr6 5717056
chr7 5240024
chr8 4357643
chr9 4502745
chr10 4904583
chr11 5564644
chr12 4961764
chr13 2690864
chr14 3419636
chr15 3204438
chr16 3894860
chr17 4996466
chr18 2245870
chr19 4657439
chr20 2751227
chr21 1254392
chr22 2189240
chrX 2086207
chrY 128891
GL000009.2 381
GL000194.1 1850
GL000195.1 3071
GL000205.2 5372
GL000213.1 24
GL000218.1 751
GL000219.1 4354
KI270711.1 415
KI270713.1 3094
KI270721.1 90
KI270726.1 7
KI270727.1 64
KI270728.1 283
KI270731.1 55
KI270734.1 148

Fragment lengths

fragments min max mean median
fragments 102568511 1 5037 192 162
global fragment-length histogram

Files

Filename Size md5
f68c1dfd5f514a92d83a781e1db3debe8ec2c235.gz 956.14 MB 48a6e02d9973aee0ea785ab0c54135a9
f68c1dfd5f514a92d83a781e1db3debe8ec2c235.gz.tbi 764.95 KB 8cd385ddad5abdc55b82a66c8ede049e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB fb58cb2ea717f44c30ac5509ae77da6b
statistics/