Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f811d64355949c750b99e65c026a632ffbd59fd6content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library f811d64355949c750b99e65c026a632ffbd59fd6
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f811d64355949c750b99e65c026a632ffbd59fd6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 847_C04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GAGTGTTTCCTCCTAA-847_C04, GTCTAACAGGAGCACG-847_C04, GGACGGATCCGGTATG-847_C04, GGAGGTTAGGCGTAAA-847_C04, ATGGACAAGTTATCCT-847_C04 (top 5 of 2437 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
176,060,637
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 176060637
chr1 15529692
chr2 13674168
chr3 11482890
chr4 9157137
chr5 9699163
chr6 9673497
chr7 9459793
chr8 7936527
chr9 7177666
chr10 8164915
chr11 9263486
chr12 8729290
chr13 4745591
chr14 6029164
chr15 5496234
chr16 6548671
chr17 7548215
chr18 4016855
chr19 6625972
chr20 4663567
chr21 2066987
chr22 3731642
chrX 4581793
chrY 11066
GL000009.2 1103
GL000194.1 4098
GL000195.1 4571
GL000205.2 10780
GL000213.1 107
GL000218.1 3008
GL000219.1 15256
KI270711.1 496
KI270713.1 2831
KI270721.1 101
KI270726.1 148
KI270727.1 238
KI270728.1 3286
KI270731.1 287
KI270734.1 346

Fragment lengths

fragments min max mean median
fragments 176060637 1 5039 191.41 167
global fragment-length histogram

Files

Filename Size md5
f811d64355949c750b99e65c026a632ffbd59fd6.gz 1.6 GB 48a4e702de7f7ca7c3650418abc3da12
f811d64355949c750b99e65c026a632ffbd59fd6.gz.tbi 958.26 KB 1681dd21f1ac2f685d8ecb6124dd11f4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB cd627252796e1b8751e871a64207c2ad
statistics/