Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2289_F04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GGGCAATAGGATGATG-2289_F04, TAAGCCAGTTTCCGGC-2289_F04, ATGGCTGTCCGGGACT-2289_F04, ATTATCCTCCTTAGGG-2289_F04, CGAAATGAGCTCGCTT-2289_F04 (top 5 of 4415 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
225,731,847
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 225731847
chr1 19873188
chr2 17701689
chr3 14665668
chr4 11741033
chr5 12592230
chr6 12508166
chr7 12174551
chr8 10150262
chr9 9247739
chr10 10436614
chr11 12003307
chr12 11104002
chr13 6019918
chr14 7618083
chr15 6979341
chr16 8370892
chr17 9688388
chr18 5243915
chr19 8441625
chr20 5895906
chr21 2580586
chr22 4681588
chrX 5941210
chrY 12186
GL000009.2 550
GL000194.1 5270
GL000195.1 5077
GL000205.2 16034
GL000213.1 55
GL000218.1 3975
GL000219.1 20300
KI270711.1 493
KI270713.1 1976
KI270721.1 107
KI270726.1 7
KI270727.1 357
KI270728.1 5035
KI270731.1 147
KI270734.1 377

Fragment lengths

fragments min max mean median
fragments 225731847 1 5039 186.89 163
global fragment-length histogram

Files

Filename Size md5
f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6.gz 2.14 GB a25203b37415cdd3c6ed01620e4ddd25
f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6.gz.tbi 1.09 MB 5396ca4ba4f022d707aceeb0a3e1cf91
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 53161f999681b0da2dfbaef7383f84e6
statistics/