Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f877364159caef08621ea201e7a6ab3185712fe7content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library f877364159caef08621ea201e7a6ab3185712fe7
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f877364159caef08621ea201e7a6ab3185712fe7
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2447_B06
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GACCTAAGTGCGCATG-2447_B06, GGTTGAGCAGTCTATG-2447_B06, CCGTTAACATCCCTCA-2447_B06, TATGGCCCATCTAGCA-2447_B06, CGCTTGCGTTGCGCGA-2447_B06 (top 5 of 4530 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
213,472,329
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 213472329
chr1 19380140
chr2 16507306
chr3 13619900
chr4 10742950
chr5 11490263
chr6 11815136
chr7 11182589
chr8 9493322
chr9 9270447
chr10 10067409
chr11 11353987
chr12 10337986
chr13 5812426
chr14 7145311
chr15 6581331
chr16 7802577
chr17 9766617
chr18 4844397
chr19 8633776
chr20 5676847
chr21 2592125
chr22 4513493
chrX 4477080
chrY 316846
GL000009.2 1555
GL000194.1 3712
GL000195.1 5180
GL000205.2 12088
GL000213.1 7
GL000218.1 4513
GL000219.1 13798
KI270711.1 815
KI270713.1 4577
KI270721.1 180
KI270726.1 29
KI270727.1 235
KI270728.1 522
KI270731.1 115
KI270734.1 742

Fragment lengths

fragments min max mean median
fragments 213472329 1 5039 208.38 166
global fragment-length histogram

Files

Filename Size md5
f877364159caef08621ea201e7a6ab3185712fe7.gz 1.97 GB 67092ae281b51c38ce263bbaaa856091
f877364159caef08621ea201e7a6ab3185712fe7.gz.tbi 1.04 MB fb7c9712a01cd9628a8b80f3d4eb5f9a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 706040334c8dff44161f00c5df9b3056
statistics/