Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/fc2d7337489a75e69c9d5c1c181a2e2775138509content_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library fc2d7337489a75e69c9d5c1c181a2e2775138509
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: fc2d7337489a75e69c9d5c1c181a2e2775138509
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2540_C02
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell CCAGCTGCAACTAGAA-2540_C02, TTTGTGAAGCGAGGTG-2540_C02, TCAAGACTCGGTTACG-2540_C02, CGCAATAGTGGACCTG-2540_C02, GTCGGTTCACATTAAC-2540_C02 (top 5 of 2953 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
168,546,524
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 168546524
chr1 15111260
chr2 13252904
chr3 11012947
chr4 8687243
chr5 9340323
chr6 9306814
chr7 8887319
chr8 7627332
chr9 7197726
chr10 8017215
chr11 8950136
chr12 8094107
chr13 4634767
chr14 5582347
chr15 5194725
chr16 5920195
chr17 7255083
chr18 3963856
chr19 6132839
chr20 4449920
chr21 2009696
chr22 3378220
chrX 4491655
chrY 12855
GL000009.2 1182
GL000194.1 2991
GL000195.1 4006
GL000205.2 8861
GL000213.1 129
GL000218.1 2158
GL000219.1 9113
KI270711.1 490
KI270713.1 2907
KI270721.1 178
KI270726.1 11
KI270727.1 730
KI270728.1 1625
KI270731.1 156
KI270734.1 503

Fragment lengths

fragments min max mean median
fragments 168546524 1 5036 182.45 160
global fragment-length histogram

Files

Filename Size md5
fc2d7337489a75e69c9d5c1c181a2e2775138509.gz 1.57 GB 64d27f9712f9bbcbdd27a00a1f74cd0e
fc2d7337489a75e69c9d5c1c181a2e2775138509.gz.tbi 960.75 KB 4dd183943143ef59145ba73cee1073cc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 1ded3ae3af19d1e205bb973c4c84dea1
statistics/