Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/fe73a2757d8d05fbb09a5d1d9532eda0be0a40facontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for human from library fe73a2757d8d05fbb09a5d1d9532eda0be0a40fa
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: fe73a2757d8d05fbb09a5d1d9532eda0be0a40fa
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: single_nucleus
  • sample_id: 2372_A04
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGGCAGGTCATTACGA-2372_A04, ATAAGTCGTGACATAT-2372_A04, GGCAGGATCTCTAGCC-2372_A04, CCGGTAGGTGTGTCCC-2372_A04, GTTTGCTGTTGCAATG-2372_A04 (top 5 of 3050 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
168,952,869
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 168952869
chr1 15155546
chr2 13227939
chr3 11040902
chr4 8683402
chr5 9313522
chr6 9334479
chr7 8989161
chr8 7618386
chr9 7062588
chr10 7866119
chr11 8909247
chr12 8229396
chr13 4606016
chr14 5706399
chr15 5308166
chr16 6294686
chr17 7400625
chr18 3919039
chr19 6402211
chr20 4531638
chr21 2002560
chr22 3507674
chrX 3558218
chrY 251761
GL000009.2 678
GL000194.1 3122
GL000195.1 4909
GL000205.2 10717
GL000213.1 60
GL000218.1 1429
GL000219.1 7226
KI270711.1 565
KI270713.1 3000
KI270721.1 149
KI270726.1 22
KI270727.1 153
KI270728.1 622
KI270731.1 142
KI270734.1 395

Fragment lengths

fragments min max mean median
fragments 168952869 1 5040 189.78 161
global fragment-length histogram

Files

Filename Size md5
fe73a2757d8d05fbb09a5d1d9532eda0be0a40fa.gz 1.58 GB 5f5dd210ad6f6fbccbbadea0335988c4
fe73a2757d8d05fbb09a5d1d9532eda0be0a40fa.gz.tbi 964.18 KB b394d1bb245213a527ee2f4385777db3
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 2e27310720115ee853c7f0bfb6513e94
statistics/