Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0031_1.h5adcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for marmoset from library P0031_1.h5ad
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_meta_resource_id: summary/johansen2025Crossspecies/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0031_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac4
  • resolution: single_nucleus
  • sample_id: P0031_1
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell TCCCTCACAAACAACA-P0031_1, ACGCCTTTCATTTGCT-P0031_1, GCTCAACCAATATAGG-P0031_1, CGCTTGCGTATTCGTC-P0031_1, GACCTGATCCCGTTAC-P0031_1 (top 5 of 148 values)
count int

count
HISTOGRAM FOR count [1, 1]
n
1,653,214
mean
1
sd
0

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 1653214
chr1 135850
chr2 101464
chr3 67050
chr4 86448
chr5 150260
chr6 82529
chr7 105805
chr8 57877
chr9 77785
chr10 89962
chr11 93026
chr12 91876
chr13 55317
chr14 58883
chr15 69006
chr16 44063
chr17 34863
chr18 34241
chr19 36536
chr20 34807
chr21 22173
chr22 91981
chrUn_NW_026528017v1 2
chrUn_NW_026528021v1 5
chrUn_NW_026528026v1 6
chrUn_NW_026528029v1 5
chrUn_NW_026528038v1 2
chrUn_NW_026528039v1 4
chrUn_NW_026528065v1 5
chrUn_NW_026528125v1 1
chrUn_NW_026528140v1 12
chrUn_NW_026528210v1 1
chrUn_NW_026528225v1 2
chrUn_NW_026528226v1 1
chrUn_NW_026528230v1 2
chrUn_NW_026528278v1 9
chrUn_NW_026528295v1 3
chrUn_NW_026528296v1 128
chrUn_NW_026528310v1 1
chrUn_NW_026528338v1 1
chrUn_NW_026528339v1 2
chrUn_NW_026528347v1 1
chrUn_NW_026528353v1 1
chrUn_NW_026528356v1 1
chrUn_NW_026528363v1 1
chrUn_NW_026528370v1 3
chrUn_NW_026528371v1 12
chrUn_NW_026528372v1 4
chrUn_NW_026528373v1 5
chrUn_NW_026528385v1 1
chrUn_NW_026528397v1 1
chrUn_NW_026528412v1 2
chrUn_NW_026528431v1 7
chrUn_NW_026528432v1 9
chrUn_NW_026528433v1 128
chrUn_NW_026528480v1 4
chrUn_NW_026528558v1 9
chrUn_NW_026528559v1 1
chrUn_NW_026528561v1 3
chrUn_NW_026528588v1 1
chrUn_NW_026528589v1 1
chrUn_NW_026528590v1 26
chrUn_NW_026528596v1 12
chrUn_NW_026528609v1 1
chrUn_NW_026528631v1 2
chrUn_NW_026528634v1 2
chrUn_NW_026528677v1 1
chrUn_NW_026528719v1 8
chrUn_NW_026528737v1 2
chrUn_NW_026528755v1 1
chrUn_NW_026528772v1 1
chrUn_NW_026528793v1 1
chrUn_NW_026528795v1 1
chrUn_NW_026528796v1 1
chrUn_NW_026528797v1 35
chrUn_NW_026528798v1 4
chrUn_NW_026528799v1 1
chrUn_NW_026528887v1 1
chrUn_NW_026528891v1 1
chrUn_NW_026528894v1 4
chrUn_NW_026528900v1 1
chrUn_NW_026528902v1 2
chrUn_NW_026528903v1 11
chrUn_NW_026528917v1 4
chrUn_NW_026528928v1 4
chrUn_NW_026528957v1 8
chrUn_NW_026528975v1 1
chrUn_NW_026528992v1 1
chrUn_NW_026528996v1 1
chrUn_NW_026529007v1 11
chrUn_NW_026529008v1 41
chrUn_NW_026529013v1 1
chrUn_NW_026529015v1 2
chrUn_NW_026529016v1 8
chrUn_NW_026529060v1 19
chrUn_NW_026529081v1 4
chrUn_NW_026529085v1 7
chrX 29182
chrX_NW_026527894v1_random 1
chrY 696
chrY_NW_026527911v1_random 2
chrY_NW_026527913v1_random 2
chrY_NW_026527914v1_random 2
chrY_NW_026527916v1_random 1
chrY_NW_026527938v1_random 4
chrY_NW_026527942v1_random 5
chrY_NW_026527950v1_random 19
chrY_NW_026527955v1_random 1
chrY_NW_026527956v1_random 148
chrY_NW_026527958v1_random 69
chrY_NW_026527966v1_random 646
chrY_NW_026527967v1_random 5
chrY_NW_026527968v1_random 11

Fragment lengths

fragments min max mean median
fragments 1653214 2 4987 156.62 118
global fragment-length histogram

Files

Filename Size md5
P0031_1.h5ad.gz 13.72 MB 8dd4e32860ee2012aac4bffc70460210
P0031_1.h5ad.gz.tbi 991.19 KB 91322a46835a621bdd37bed723345abd
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.42 KB 1a11b6dec3144ec807718f0ea2ca0087
statistics/