Resource
| Id | summary/johansen2025Crossspecies/atac_fragments/marmoset/P0052_2 |
|---|---|
| Type | fragment_score |
| Version | 0 |
| Summary | ATAC fragments for marmoset from library P0052_2 |
| Description | |
| Labels |
|
Scores (2)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| cell | str |
cell |
 |
ATGTAACGTTTCGCGC-P0052_2, CTCCTAATCCAAGTGT-P0052_2, GGAGCATAGTGAACAG-P0052_2, AAGCATGAGGTGTTAC-P0052_2, CGTTTGGAGCCTTAAA-P0052_2 (top 5 of 9623 values) | ||
| count | int |
count |
 |
[1, 1] |
|
n counts fragments; sd is the population standard deviation.
Fragments
| Chromosome | Fragments |
|---|---|
| all chromosomes | 282765188 |
| chr1 | 22758572 |
| chr2 | 18932829 |
| chr3 | 13871971 |
| chr4 | 15170729 |
| chr5 | 22872844 |
| chr6 | 14795849 |
| chr7 | 18415834 |
| chr8 | 11406205 |
| chr9 | 13850504 |
| chr10 | 14959239 |
| chr11 | 14956223 |
| chr12 | 14883841 |
| chr13 | 10993793 |
| chr14 | 10633259 |
| chr15 | 10824830 |
| chr16 | 8641176 |
| chr17 | 6512591 |
| chr18 | 5291462 |
| chr19 | 5793417 |
| chr20 | 5736801 |
| chr21 | 4244294 |
| chr22 | 9915146 |
| chrUn_NW_026528016v1 | 44 |
| chrUn_NW_026528017v1 | 113 |
| chrUn_NW_026528021v1 | 1211 |
| chrUn_NW_026528026v1 | 908 |
| chrUn_NW_026528029v1 | 760 |
| chrUn_NW_026528038v1 | 853 |
| chrUn_NW_026528039v1 | 1263 |
| chrUn_NW_026528065v1 | 369 |
| chrUn_NW_026528075v1 | 350 |
| chrUn_NW_026528103v1 | 85 |
| chrUn_NW_026528123v1 | 14 |
| chrUn_NW_026528125v1 | 127 |
| chrUn_NW_026528140v1 | 1133 |
| chrUn_NW_026528210v1 | 173 |
| chrUn_NW_026528215v1 | 297 |
| chrUn_NW_026528217v1 | 2 |
| chrUn_NW_026528218v1 | 12 |
| chrUn_NW_026528219v1 | 21 |
| chrUn_NW_026528220v1 | 2 |
| chrUn_NW_026528221v1 | 4 |
| chrUn_NW_026528222v1 | 7 |
| chrUn_NW_026528224v1 | 14 |
| chrUn_NW_026528225v1 | 86 |
| chrUn_NW_026528226v1 | 286 |
| chrUn_NW_026528228v1 | 290 |
| chrUn_NW_026528230v1 | 458 |
| chrUn_NW_026528232v1 | 1691 |
| chrUn_NW_026528259v1 | 12 |
| chrUn_NW_026528278v1 | 813 |
| chrUn_NW_026528285v1 | 88 |
| chrUn_NW_026528292v1 | 24 |
| chrUn_NW_026528295v1 | 449 |
| chrUn_NW_026528296v1 | 21976 |
| chrUn_NW_026528310v1 | 211 |
| chrUn_NW_026528320v1 | 43 |
| chrUn_NW_026528327v1 | 10 |
| chrUn_NW_026528332v1 | 45 |
| chrUn_NW_026528335v1 | 19 |
| chrUn_NW_026528338v1 | 55 |
| chrUn_NW_026528339v1 | 58 |
| chrUn_NW_026528345v1 | 38 |
| chrUn_NW_026528347v1 | 15 |
| chrUn_NW_026528350v1 | 46 |
| chrUn_NW_026528353v1 | 84 |
| chrUn_NW_026528356v1 | 38 |
| chrUn_NW_026528358v1 | 4 |
| chrUn_NW_026528360v1 | 8 |
| chrUn_NW_026528363v1 | 398 |
| chrUn_NW_026528370v1 | 250 |
| chrUn_NW_026528371v1 | 1425 |
| chrUn_NW_026528372v1 | 602 |
| chrUn_NW_026528373v1 | 1578 |
| chrUn_NW_026528378v1 | 10 |
| chrUn_NW_026528380v1 | 6 |
| chrUn_NW_026528382v1 | 3 |
| chrUn_NW_026528384v1 | 25 |
| chrUn_NW_026528385v1 | 39 |
| chrUn_NW_026528390v1 | 40 |
| chrUn_NW_026528393v1 | 11 |
| chrUn_NW_026528396v1 | 4 |
| chrUn_NW_026528397v1 | 25 |
| chrUn_NW_026528402v1 | 3 |
| chrUn_NW_026528403v1 | 13 |
| chrUn_NW_026528404v1 | 2 |
| chrUn_NW_026528408v1 | 3 |
| chrUn_NW_026528409v1 | 10 |
| chrUn_NW_026528412v1 | 16 |
| chrUn_NW_026528413v1 | 8 |
| chrUn_NW_026528416v1 | 6 |
| chrUn_NW_026528419v1 | 1 |
| chrUn_NW_026528420v1 | 1 |
| chrUn_NW_026528423v1 | 75 |
| chrUn_NW_026528431v1 | 435 |
| chrUn_NW_026528432v1 | 831 |
| chrUn_NW_026528433v1 | 4609 |
| chrUn_NW_026528440v1 | 9 |
| chrUn_NW_026528480v1 | 736 |
| chrUn_NW_026528558v1 | 3100 |
| chrUn_NW_026528559v1 | 102 |
| chrUn_NW_026528561v1 | 4 |
| chrUn_NW_026528588v1 | 15 |
| chrUn_NW_026528589v1 | 40 |
| chrUn_NW_026528590v1 | 1943 |
| chrUn_NW_026528596v1 | 3634 |
| chrUn_NW_026528609v1 | 29 |
| chrUn_NW_026528611v1 | 23 |
| chrUn_NW_026528615v1 | 17 |
| chrUn_NW_026528621v1 | 325 |
| chrUn_NW_026528631v1 | 102 |
| chrUn_NW_026528634v1 | 312 |
| chrUn_NW_026528635v1 | 10 |
| chrUn_NW_026528644v1 | 6 |
| chrUn_NW_026528650v1 | 18 |
| chrUn_NW_026528656v1 | 6 |
| chrUn_NW_026528660v1 | 1 |
| chrUn_NW_026528661v1 | 30 |
| chrUn_NW_026528668v1 | 14 |
| chrUn_NW_026528670v1 | 2 |
| chrUn_NW_026528677v1 | 39 |
| chrUn_NW_026528708v1 | 26 |
| chrUn_NW_026528719v1 | 943 |
| chrUn_NW_026528737v1 | 68 |
| chrUn_NW_026528739v1 | 2 |
| chrUn_NW_026528741v1 | 4 |
| chrUn_NW_026528745v1 | 16 |
| chrUn_NW_026528748v1 | 5 |
| chrUn_NW_026528749v1 | 1 |
| chrUn_NW_026528750v1 | 21 |
| chrUn_NW_026528751v1 | 2 |
| chrUn_NW_026528754v1 | 10 |
| chrUn_NW_026528755v1 | 152 |
| chrUn_NW_026528772v1 | 25 |
| chrUn_NW_026528775v1 | 28 |
| chrUn_NW_026528777v1 | 9 |
| chrUn_NW_026528784v1 | 16 |
| chrUn_NW_026528785v1 | 14 |
| chrUn_NW_026528786v1 | 23 |
| chrUn_NW_026528788v1 | 10 |
| chrUn_NW_026528791v1 | 1 |
| chrUn_NW_026528792v1 | 2 |
| chrUn_NW_026528793v1 | 200 |
| chrUn_NW_026528795v1 | 207 |
| chrUn_NW_026528796v1 | 550 |
| chrUn_NW_026528797v1 | 7153 |
| chrUn_NW_026528798v1 | 1687 |
| chrUn_NW_026528799v1 | 350 |
| chrUn_NW_026528880v1 | 34 |
| chrUn_NW_026528882v1 | 18 |
| chrUn_NW_026528883v1 | 2 |
| chrUn_NW_026528884v1 | 21 |
| chrUn_NW_026528885v1 | 9 |
| chrUn_NW_026528886v1 | 1 |
| chrUn_NW_026528887v1 | 65 |
| chrUn_NW_026528888v1 | 24 |
| chrUn_NW_026528889v1 | 14 |
| chrUn_NW_026528891v1 | 75 |
| chrUn_NW_026528893v1 | 12 |
| chrUn_NW_026528894v1 | 570 |
| chrUn_NW_026528896v1 | 2 |
| chrUn_NW_026528899v1 | 23 |
| chrUn_NW_026528900v1 | 177 |
| chrUn_NW_026528902v1 | 188 |
| chrUn_NW_026528903v1 | 2059 |
| chrUn_NW_026528917v1 | 465 |
| chrUn_NW_026528926v1 | 197 |
| chrUn_NW_026528928v1 | 1792 |
| chrUn_NW_026528937v1 | 94 |
| chrUn_NW_026528938v1 | 9 |
| chrUn_NW_026528950v1 | 33 |
| chrUn_NW_026528952v1 | 31 |
| chrUn_NW_026528957v1 | 1620 |
| chrUn_NW_026528960v1 | 353 |
| chrUn_NW_026528975v1 | 378 |
| chrUn_NW_026528984v1 | 87 |
| chrUn_NW_026528985v1 | 8 |
| chrUn_NW_026528986v1 | 5 |
| chrUn_NW_026528987v1 | 14 |
| chrUn_NW_026528988v1 | 156 |
| chrUn_NW_026528989v1 | 23 |
| chrUn_NW_026528992v1 | 1 |
| chrUn_NW_026528994v1 | 1 |
| chrUn_NW_026528995v1 | 3 |
| chrUn_NW_026528996v1 | 63 |
| chrUn_NW_026529007v1 | 733 |
| chrUn_NW_026529008v1 | 8670 |
| chrUn_NW_026529013v1 | 144 |
| chrUn_NW_026529015v1 | 243 |
| chrUn_NW_026529016v1 | 2132 |
| chrUn_NW_026529060v1 | 2567 |
| chrUn_NW_026529081v1 | 329 |
| chrUn_NW_026529085v1 | 739 |
| chrX | 7144861 |
| chrX_NW_026527892v1_random | 682 |
| chrX_NW_026527894v1_random | 1553 |
| chrX_NW_026527897v1_random | 302 |
| chrY | 36825 |
| chrY_NW_026527911v1_random | 33 |
| chrY_NW_026527913v1_random | 159 |
| chrY_NW_026527914v1_random | 1141 |
| chrY_NW_026527915v1_random | 6 |
| chrY_NW_026527919v1_random | 40 |
| chrY_NW_026527927v1_random | 10 |
| chrY_NW_026527932v1_random | 16 |
| chrY_NW_026527938v1_random | 1062 |
| chrY_NW_026527939v1_random | 59 |
| chrY_NW_026527942v1_random | 8 |
| chrY_NW_026527949v1_random | 3512 |
| chrY_NW_026527950v1_random | 2319 |
| chrY_NW_026527951v1_random | 201 |
| chrY_NW_026527955v1_random | 151 |
| chrY_NW_026527956v1_random | 2425 |
| chrY_NW_026527958v1_random | 1261 |
| chrY_NW_026527960v1_random | 225 |
| chrY_NW_026527961v1_random | 682 |
| chrY_NW_026527966v1_random | 12755 |
| chrY_NW_026527967v1_random | 220 |
| chrY_NW_026527968v1_random | 1827 |
| chrY_NW_026527969v1_random | 33 |
| chrY_NW_026527980v1_random | 147 |
Fragment lengths
| fragments | min | max | mean | median | |
|---|---|---|---|---|---|
| fragments | 282765188 | 1 | 5039 | 174.42 | 152 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| P0052_2.gz | 2.69 GB | 812832dbbfbf56383b159278c7b6d705 |
| P0052_2.gz.tbi | 1.17 MB | 61d2d14d9c7497f3785d4721be378fce |
| fragment_count_dist_plot.py | 853.0 B | 9d735ee8c687286d50484e7f1e398e60 |
| genomic_resource.yaml | 1.41 KB | bcd245a6f01be75bebe6d307af548ec2 |
| statistics/ |