Resource
| Id | summary/johansen2025Crossspecies/atac_fragments/marmoset/P0057_1.h5ad |
|---|---|
| Type | fragment_score |
| Version | 0 |
| Summary | ATAC fragments for marmoset from library P0057_1.h5ad |
| Description | |
| Labels |
|
Scores (2)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| cell | str |
cell |
 |
GAGTGTTTCATGGTTA-P0057_1, GCTTTATTCGTTATAG-P0057_1, CCGCTTAGTGGGTACT-P0057_1, ATGTTGTCATTGTCCT-P0057_1, TTAACCAAGCTCCTTA-P0057_1 (top 5 of 6722 values) | ||
| count | int |
count |
 |
[1, 1] |
|
n counts fragments; sd is the population standard deviation.
Fragments
| Chromosome | Fragments |
|---|---|
| all chromosomes | 233682121 |
| chr1 | 18182028 |
| chr2 | 15609207 |
| chr3 | 11499585 |
| chr4 | 12782082 |
| chr5 | 18896006 |
| chr6 | 11846541 |
| chr7 | 15316050 |
| chr8 | 9267694 |
| chr9 | 11573621 |
| chr10 | 12864944 |
| chr11 | 12269565 |
| chr12 | 12107649 |
| chr13 | 9039097 |
| chr14 | 8867935 |
| chr15 | 9048556 |
| chr16 | 6989197 |
| chr17 | 5197027 |
| chr18 | 4339265 |
| chr19 | 4880277 |
| chr20 | 4532354 |
| chr21 | 3465681 |
| chr22 | 8577386 |
| chrUn_NW_026528016v1 | 33 |
| chrUn_NW_026528017v1 | 130 |
| chrUn_NW_026528021v1 | 812 |
| chrUn_NW_026528026v1 | 824 |
| chrUn_NW_026528029v1 | 582 |
| chrUn_NW_026528038v1 | 685 |
| chrUn_NW_026528039v1 | 860 |
| chrUn_NW_026528065v1 | 258 |
| chrUn_NW_026528075v1 | 337 |
| chrUn_NW_026528103v1 | 104 |
| chrUn_NW_026528123v1 | 10 |
| chrUn_NW_026528125v1 | 120 |
| chrUn_NW_026528140v1 | 612 |
| chrUn_NW_026528210v1 | 205 |
| chrUn_NW_026528215v1 | 296 |
| chrUn_NW_026528217v1 | 1 |
| chrUn_NW_026528218v1 | 7 |
| chrUn_NW_026528219v1 | 19 |
| chrUn_NW_026528221v1 | 5 |
| chrUn_NW_026528222v1 | 5 |
| chrUn_NW_026528224v1 | 7 |
| chrUn_NW_026528225v1 | 82 |
| chrUn_NW_026528226v1 | 80 |
| chrUn_NW_026528228v1 | 263 |
| chrUn_NW_026528230v1 | 243 |
| chrUn_NW_026528232v1 | 2846 |
| chrUn_NW_026528259v1 | 8 |
| chrUn_NW_026528278v1 | 623 |
| chrUn_NW_026528285v1 | 56 |
| chrUn_NW_026528292v1 | 34 |
| chrUn_NW_026528295v1 | 419 |
| chrUn_NW_026528296v1 | 15353 |
| chrUn_NW_026528310v1 | 173 |
| chrUn_NW_026528320v1 | 30 |
| chrUn_NW_026528327v1 | 29 |
| chrUn_NW_026528332v1 | 42 |
| chrUn_NW_026528335v1 | 11 |
| chrUn_NW_026528338v1 | 67 |
| chrUn_NW_026528339v1 | 52 |
| chrUn_NW_026528345v1 | 44 |
| chrUn_NW_026528347v1 | 12 |
| chrUn_NW_026528350v1 | 17 |
| chrUn_NW_026528353v1 | 48 |
| chrUn_NW_026528356v1 | 38 |
| chrUn_NW_026528358v1 | 6 |
| chrUn_NW_026528360v1 | 2 |
| chrUn_NW_026528363v1 | 233 |
| chrUn_NW_026528370v1 | 166 |
| chrUn_NW_026528371v1 | 1424 |
| chrUn_NW_026528372v1 | 453 |
| chrUn_NW_026528373v1 | 1178 |
| chrUn_NW_026528378v1 | 10 |
| chrUn_NW_026528380v1 | 7 |
| chrUn_NW_026528381v1 | 1 |
| chrUn_NW_026528382v1 | 3 |
| chrUn_NW_026528384v1 | 23 |
| chrUn_NW_026528385v1 | 43 |
| chrUn_NW_026528390v1 | 29 |
| chrUn_NW_026528393v1 | 11 |
| chrUn_NW_026528396v1 | 2 |
| chrUn_NW_026528397v1 | 30 |
| chrUn_NW_026528402v1 | 5 |
| chrUn_NW_026528403v1 | 12 |
| chrUn_NW_026528408v1 | 5 |
| chrUn_NW_026528409v1 | 16 |
| chrUn_NW_026528412v1 | 14 |
| chrUn_NW_026528413v1 | 9 |
| chrUn_NW_026528416v1 | 9 |
| chrUn_NW_026528419v1 | 2 |
| chrUn_NW_026528420v1 | 4 |
| chrUn_NW_026528423v1 | 73 |
| chrUn_NW_026528431v1 | 341 |
| chrUn_NW_026528432v1 | 665 |
| chrUn_NW_026528433v1 | 5863 |
| chrUn_NW_026528440v1 | 14 |
| chrUn_NW_026528471v1 | 2 |
| chrUn_NW_026528480v1 | 872 |
| chrUn_NW_026528558v1 | 2914 |
| chrUn_NW_026528559v1 | 81 |
| chrUn_NW_026528588v1 | 13 |
| chrUn_NW_026528589v1 | 30 |
| chrUn_NW_026528590v1 | 1679 |
| chrUn_NW_026528596v1 | 4022 |
| chrUn_NW_026528609v1 | 27 |
| chrUn_NW_026528611v1 | 13 |
| chrUn_NW_026528615v1 | 20 |
| chrUn_NW_026528621v1 | 394 |
| chrUn_NW_026528631v1 | 121 |
| chrUn_NW_026528634v1 | 326 |
| chrUn_NW_026528635v1 | 4 |
| chrUn_NW_026528644v1 | 3 |
| chrUn_NW_026528650v1 | 28 |
| chrUn_NW_026528656v1 | 1 |
| chrUn_NW_026528660v1 | 1 |
| chrUn_NW_026528661v1 | 23 |
| chrUn_NW_026528668v1 | 23 |
| chrUn_NW_026528670v1 | 1 |
| chrUn_NW_026528677v1 | 40 |
| chrUn_NW_026528708v1 | 13 |
| chrUn_NW_026528719v1 | 936 |
| chrUn_NW_026528737v1 | 42 |
| chrUn_NW_026528739v1 | 3 |
| chrUn_NW_026528745v1 | 14 |
| chrUn_NW_026528748v1 | 2 |
| chrUn_NW_026528749v1 | 1 |
| chrUn_NW_026528750v1 | 26 |
| chrUn_NW_026528751v1 | 1 |
| chrUn_NW_026528752v1 | 2 |
| chrUn_NW_026528754v1 | 15 |
| chrUn_NW_026528755v1 | 163 |
| chrUn_NW_026528772v1 | 20 |
| chrUn_NW_026528775v1 | 10 |
| chrUn_NW_026528777v1 | 10 |
| chrUn_NW_026528784v1 | 9 |
| chrUn_NW_026528785v1 | 18 |
| chrUn_NW_026528786v1 | 23 |
| chrUn_NW_026528788v1 | 4 |
| chrUn_NW_026528791v1 | 1 |
| chrUn_NW_026528792v1 | 1 |
| chrUn_NW_026528793v1 | 176 |
| chrUn_NW_026528795v1 | 98 |
| chrUn_NW_026528796v1 | 340 |
| chrUn_NW_026528797v1 | 4326 |
| chrUn_NW_026528798v1 | 1659 |
| chrUn_NW_026528799v1 | 583 |
| chrUn_NW_026528880v1 | 24 |
| chrUn_NW_026528882v1 | 9 |
| chrUn_NW_026528883v1 | 1 |
| chrUn_NW_026528884v1 | 4 |
| chrUn_NW_026528885v1 | 6 |
| chrUn_NW_026528886v1 | 1 |
| chrUn_NW_026528887v1 | 60 |
| chrUn_NW_026528888v1 | 21 |
| chrUn_NW_026528889v1 | 23 |
| chrUn_NW_026528891v1 | 59 |
| chrUn_NW_026528893v1 | 13 |
| chrUn_NW_026528894v1 | 631 |
| chrUn_NW_026528896v1 | 5 |
| chrUn_NW_026528899v1 | 19 |
| chrUn_NW_026528900v1 | 146 |
| chrUn_NW_026528902v1 | 175 |
| chrUn_NW_026528903v1 | 1134 |
| chrUn_NW_026528917v1 | 312 |
| chrUn_NW_026528926v1 | 188 |
| chrUn_NW_026528928v1 | 1649 |
| chrUn_NW_026528937v1 | 73 |
| chrUn_NW_026528938v1 | 9 |
| chrUn_NW_026528950v1 | 35 |
| chrUn_NW_026528952v1 | 18 |
| chrUn_NW_026528957v1 | 1485 |
| chrUn_NW_026528960v1 | 777 |
| chrUn_NW_026528975v1 | 353 |
| chrUn_NW_026528984v1 | 62 |
| chrUn_NW_026528985v1 | 6 |
| chrUn_NW_026528986v1 | 1 |
| chrUn_NW_026528987v1 | 6 |
| chrUn_NW_026528988v1 | 159 |
| chrUn_NW_026528989v1 | 24 |
| chrUn_NW_026528992v1 | 2 |
| chrUn_NW_026528994v1 | 1 |
| chrUn_NW_026528995v1 | 2 |
| chrUn_NW_026528996v1 | 32 |
| chrUn_NW_026529007v1 | 593 |
| chrUn_NW_026529008v1 | 4481 |
| chrUn_NW_026529013v1 | 116 |
| chrUn_NW_026529015v1 | 206 |
| chrUn_NW_026529016v1 | 1785 |
| chrUn_NW_026529060v1 | 2640 |
| chrUn_NW_026529081v1 | 258 |
| chrUn_NW_026529085v1 | 648 |
| chrX | 6403026 |
| chrX_NW_026527892v1_random | 594 |
| chrX_NW_026527894v1_random | 1167 |
| chrX_NW_026527897v1_random | 294 |
| chrY | 27075 |
| chrY_NW_026527911v1_random | 27 |
| chrY_NW_026527913v1_random | 62 |
| chrY_NW_026527914v1_random | 713 |
| chrY_NW_026527915v1_random | 1 |
| chrY_NW_026527919v1_random | 29 |
| chrY_NW_026527927v1_random | 7 |
| chrY_NW_026527932v1_random | 13 |
| chrY_NW_026527938v1_random | 943 |
| chrY_NW_026527939v1_random | 49 |
| chrY_NW_026527942v1_random | 5 |
| chrY_NW_026527945v1_random | 1 |
| chrY_NW_026527949v1_random | 2956 |
| chrY_NW_026527950v1_random | 1090 |
| chrY_NW_026527951v1_random | 180 |
| chrY_NW_026527955v1_random | 123 |
| chrY_NW_026527956v1_random | 2352 |
| chrY_NW_026527958v1_random | 1093 |
| chrY_NW_026527960v1_random | 105 |
| chrY_NW_026527961v1_random | 269 |
| chrY_NW_026527966v1_random | 11415 |
| chrY_NW_026527967v1_random | 240 |
| chrY_NW_026527968v1_random | 1878 |
| chrY_NW_026527969v1_random | 12 |
| chrY_NW_026527980v1_random | 134 |
Fragment lengths
| fragments | min | max | mean | median | |
|---|---|---|---|---|---|
| fragments | 233682121 | 1 | 5037 | 140.03 | 101 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| P0057_1.h5ad.gz | 2.18 GB | 2f2f54be694ec23451c5901e88ceec59 |
| P0057_1.h5ad.gz.tbi | 1.07 MB | 1b70701d08a8986358de71d92b33b6d3 |
| fragment_count_dist_plot.py | 853.0 B | 9d735ee8c687286d50484e7f1e398e60 |
| genomic_resource.yaml | 1.42 KB | 85ce7dc183e7a1ea8b89590dca16cf8a |
| statistics/ |