Resource
| Id | summary/johansen2025Crossspecies/atac_fragments/marmoset/P0058_2 |
|---|---|
| Type | fragment_score |
| Version | 0 |
| Summary | ATAC fragments for marmoset from library P0058_2 |
| Description | |
| Labels |
|
Scores (2)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| cell | str |
cell |
 |
CCCGTAAAGCGCATTG-P0058_2, ATTGTGATCGGTTTGG-P0058_2, GGTCTTGAGGCGCATC-P0058_2, ACGACAAAGGTCCTAG-P0058_2, CAATGAACAACACCTA-P0058_2 (top 5 of 4559 values) | ||
| count | int |
count |
 |
[1, 1] |
|
n counts fragments; sd is the population standard deviation.
Fragments
| Chromosome | Fragments |
|---|---|
| all chromosomes | 223613347 |
| chr1 | 17846675 |
| chr2 | 15022403 |
| chr3 | 11162344 |
| chr4 | 12395872 |
| chr5 | 17714733 |
| chr6 | 11363167 |
| chr7 | 14374640 |
| chr8 | 8942752 |
| chr9 | 11131734 |
| chr10 | 11977835 |
| chr11 | 11783985 |
| chr12 | 11625823 |
| chr13 | 8697019 |
| chr14 | 8545097 |
| chr15 | 8557509 |
| chr16 | 6746867 |
| chr17 | 5034419 |
| chr18 | 4083777 |
| chr19 | 4680319 |
| chr20 | 4333145 |
| chr21 | 3310348 |
| chr22 | 8054154 |
| chrUn_NW_026528016v1 | 51 |
| chrUn_NW_026528017v1 | 158 |
| chrUn_NW_026528021v1 | 825 |
| chrUn_NW_026528026v1 | 884 |
| chrUn_NW_026528029v1 | 574 |
| chrUn_NW_026528038v1 | 616 |
| chrUn_NW_026528039v1 | 835 |
| chrUn_NW_026528065v1 | 335 |
| chrUn_NW_026528075v1 | 305 |
| chrUn_NW_026528103v1 | 86 |
| chrUn_NW_026528123v1 | 10 |
| chrUn_NW_026528125v1 | 126 |
| chrUn_NW_026528140v1 | 698 |
| chrUn_NW_026528210v1 | 193 |
| chrUn_NW_026528215v1 | 272 |
| chrUn_NW_026528217v1 | 3 |
| chrUn_NW_026528218v1 | 8 |
| chrUn_NW_026528219v1 | 14 |
| chrUn_NW_026528220v1 | 1 |
| chrUn_NW_026528221v1 | 1 |
| chrUn_NW_026528222v1 | 4 |
| chrUn_NW_026528224v1 | 12 |
| chrUn_NW_026528225v1 | 78 |
| chrUn_NW_026528226v1 | 78 |
| chrUn_NW_026528228v1 | 325 |
| chrUn_NW_026528230v1 | 313 |
| chrUn_NW_026528232v1 | 2225 |
| chrUn_NW_026528259v1 | 14 |
| chrUn_NW_026528278v1 | 662 |
| chrUn_NW_026528285v1 | 62 |
| chrUn_NW_026528292v1 | 28 |
| chrUn_NW_026528295v1 | 403 |
| chrUn_NW_026528296v1 | 13926 |
| chrUn_NW_026528310v1 | 227 |
| chrUn_NW_026528320v1 | 39 |
| chrUn_NW_026528327v1 | 27 |
| chrUn_NW_026528332v1 | 38 |
| chrUn_NW_026528335v1 | 14 |
| chrUn_NW_026528338v1 | 53 |
| chrUn_NW_026528339v1 | 54 |
| chrUn_NW_026528345v1 | 31 |
| chrUn_NW_026528347v1 | 16 |
| chrUn_NW_026528350v1 | 37 |
| chrUn_NW_026528353v1 | 44 |
| chrUn_NW_026528356v1 | 34 |
| chrUn_NW_026528358v1 | 5 |
| chrUn_NW_026528360v1 | 4 |
| chrUn_NW_026528363v1 | 330 |
| chrUn_NW_026528370v1 | 215 |
| chrUn_NW_026528371v1 | 1396 |
| chrUn_NW_026528372v1 | 373 |
| chrUn_NW_026528373v1 | 1010 |
| chrUn_NW_026528378v1 | 11 |
| chrUn_NW_026528380v1 | 8 |
| chrUn_NW_026528381v1 | 1 |
| chrUn_NW_026528382v1 | 5 |
| chrUn_NW_026528384v1 | 29 |
| chrUn_NW_026528385v1 | 52 |
| chrUn_NW_026528390v1 | 28 |
| chrUn_NW_026528393v1 | 22 |
| chrUn_NW_026528396v1 | 6 |
| chrUn_NW_026528397v1 | 33 |
| chrUn_NW_026528402v1 | 7 |
| chrUn_NW_026528403v1 | 6 |
| chrUn_NW_026528408v1 | 1 |
| chrUn_NW_026528409v1 | 9 |
| chrUn_NW_026528412v1 | 24 |
| chrUn_NW_026528413v1 | 5 |
| chrUn_NW_026528416v1 | 12 |
| chrUn_NW_026528419v1 | 2 |
| chrUn_NW_026528420v1 | 2 |
| chrUn_NW_026528423v1 | 83 |
| chrUn_NW_026528431v1 | 279 |
| chrUn_NW_026528432v1 | 888 |
| chrUn_NW_026528433v1 | 4128 |
| chrUn_NW_026528440v1 | 8 |
| chrUn_NW_026528471v1 | 2 |
| chrUn_NW_026528480v1 | 847 |
| chrUn_NW_026528558v1 | 2833 |
| chrUn_NW_026528559v1 | 105 |
| chrUn_NW_026528561v1 | 7 |
| chrUn_NW_026528588v1 | 8 |
| chrUn_NW_026528589v1 | 20 |
| chrUn_NW_026528590v1 | 1613 |
| chrUn_NW_026528596v1 | 3885 |
| chrUn_NW_026528609v1 | 35 |
| chrUn_NW_026528611v1 | 18 |
| chrUn_NW_026528615v1 | 28 |
| chrUn_NW_026528621v1 | 341 |
| chrUn_NW_026528631v1 | 146 |
| chrUn_NW_026528634v1 | 339 |
| chrUn_NW_026528635v1 | 6 |
| chrUn_NW_026528644v1 | 5 |
| chrUn_NW_026528650v1 | 22 |
| chrUn_NW_026528656v1 | 3 |
| chrUn_NW_026528660v1 | 3 |
| chrUn_NW_026528661v1 | 36 |
| chrUn_NW_026528668v1 | 19 |
| chrUn_NW_026528670v1 | 4 |
| chrUn_NW_026528677v1 | 25 |
| chrUn_NW_026528708v1 | 20 |
| chrUn_NW_026528719v1 | 850 |
| chrUn_NW_026528737v1 | 36 |
| chrUn_NW_026528739v1 | 4 |
| chrUn_NW_026528745v1 | 28 |
| chrUn_NW_026528748v1 | 2 |
| chrUn_NW_026528749v1 | 2 |
| chrUn_NW_026528750v1 | 20 |
| chrUn_NW_026528754v1 | 10 |
| chrUn_NW_026528755v1 | 175 |
| chrUn_NW_026528772v1 | 25 |
| chrUn_NW_026528775v1 | 17 |
| chrUn_NW_026528777v1 | 5 |
| chrUn_NW_026528784v1 | 12 |
| chrUn_NW_026528785v1 | 12 |
| chrUn_NW_026528786v1 | 20 |
| chrUn_NW_026528788v1 | 5 |
| chrUn_NW_026528791v1 | 3 |
| chrUn_NW_026528792v1 | 6 |
| chrUn_NW_026528793v1 | 192 |
| chrUn_NW_026528795v1 | 104 |
| chrUn_NW_026528796v1 | 340 |
| chrUn_NW_026528797v1 | 4622 |
| chrUn_NW_026528798v1 | 1584 |
| chrUn_NW_026528799v1 | 427 |
| chrUn_NW_026528880v1 | 27 |
| chrUn_NW_026528882v1 | 9 |
| chrUn_NW_026528883v1 | 1 |
| chrUn_NW_026528884v1 | 13 |
| chrUn_NW_026528885v1 | 11 |
| chrUn_NW_026528887v1 | 67 |
| chrUn_NW_026528888v1 | 19 |
| chrUn_NW_026528889v1 | 17 |
| chrUn_NW_026528891v1 | 72 |
| chrUn_NW_026528893v1 | 11 |
| chrUn_NW_026528894v1 | 591 |
| chrUn_NW_026528896v1 | 4 |
| chrUn_NW_026528899v1 | 18 |
| chrUn_NW_026528900v1 | 165 |
| chrUn_NW_026528902v1 | 193 |
| chrUn_NW_026528903v1 | 1367 |
| chrUn_NW_026528917v1 | 315 |
| chrUn_NW_026528926v1 | 172 |
| chrUn_NW_026528928v1 | 1540 |
| chrUn_NW_026528937v1 | 101 |
| chrUn_NW_026528938v1 | 12 |
| chrUn_NW_026528950v1 | 25 |
| chrUn_NW_026528952v1 | 21 |
| chrUn_NW_026528957v1 | 1516 |
| chrUn_NW_026528960v1 | 646 |
| chrUn_NW_026528975v1 | 306 |
| chrUn_NW_026528984v1 | 60 |
| chrUn_NW_026528985v1 | 20 |
| chrUn_NW_026528986v1 | 1 |
| chrUn_NW_026528987v1 | 10 |
| chrUn_NW_026528988v1 | 181 |
| chrUn_NW_026528989v1 | 20 |
| chrUn_NW_026528992v1 | 2 |
| chrUn_NW_026528996v1 | 41 |
| chrUn_NW_026529007v1 | 580 |
| chrUn_NW_026529008v1 | 4705 |
| chrUn_NW_026529013v1 | 112 |
| chrUn_NW_026529015v1 | 206 |
| chrUn_NW_026529016v1 | 1847 |
| chrUn_NW_026529060v1 | 2294 |
| chrUn_NW_026529081v1 | 307 |
| chrUn_NW_026529085v1 | 743 |
| chrX | 6101634 |
| chrX_NW_026527892v1_random | 611 |
| chrX_NW_026527894v1_random | 1061 |
| chrX_NW_026527897v1_random | 312 |
| chrY | 30191 |
| chrY_NW_026527909v1_random | 1 |
| chrY_NW_026527911v1_random | 32 |
| chrY_NW_026527913v1_random | 92 |
| chrY_NW_026527914v1_random | 757 |
| chrY_NW_026527915v1_random | 4 |
| chrY_NW_026527919v1_random | 27 |
| chrY_NW_026527927v1_random | 9 |
| chrY_NW_026527932v1_random | 14 |
| chrY_NW_026527938v1_random | 1050 |
| chrY_NW_026527939v1_random | 56 |
| chrY_NW_026527942v1_random | 5 |
| chrY_NW_026527949v1_random | 3078 |
| chrY_NW_026527950v1_random | 1219 |
| chrY_NW_026527951v1_random | 187 |
| chrY_NW_026527955v1_random | 121 |
| chrY_NW_026527956v1_random | 2021 |
| chrY_NW_026527958v1_random | 969 |
| chrY_NW_026527960v1_random | 126 |
| chrY_NW_026527961v1_random | 364 |
| chrY_NW_026527966v1_random | 11336 |
| chrY_NW_026527967v1_random | 302 |
| chrY_NW_026527968v1_random | 2054 |
| chrY_NW_026527969v1_random | 13 |
| chrY_NW_026527980v1_random | 124 |
Fragment lengths
| fragments | min | max | mean | median | |
|---|---|---|---|---|---|
| fragments | 223613347 | 1 | 5032 | 147.05 | 105 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| P0058_2.gz | 2.06 GB | 62861ea37dbc101ccf46f3858ee5242e |
| P0058_2.gz.tbi | 1.03 MB | 05f5c6294423f518e9749cc589afbe30 |
| fragment_count_dist_plot.py | 853.0 B | 9d735ee8c687286d50484e7f1e398e60 |
| genomic_resource.yaml | 1.41 KB | 3e405dd37c2b0f4a2b944001598507b2 |
| statistics/ |