Resource
| Id | summary/johansen2025Crossspecies/atac_fragments/marmoset/P0065_2.h5ad |
|---|---|
| Type | fragment_score |
| Version | 0 |
| Summary | ATAC fragments for marmoset from library P0065_2.h5ad |
| Description | |
| Labels |
|
Scores (2)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| cell | str |
cell |
 |
TTGACATCACAAACTT-P0065_2, TAACAAGCACCAGGTT-P0065_2, TGGTTCTGTTGTAACG-P0065_2, TAGCTTAAGTAGGATG-P0065_2, TTCATTCAGCATGAAG-P0065_2 (top 5 of 2603 values) | ||
| count | int |
count |
 |
[1, 1] |
|
n counts fragments; sd is the population standard deviation.
Fragments
| Chromosome | Fragments |
|---|---|
| all chromosomes | 129228495 |
| chr1 | 10242631 |
| chr2 | 8482287 |
| chr3 | 6477729 |
| chr4 | 7085851 |
| chr5 | 10307817 |
| chr6 | 6660708 |
| chr7 | 8237012 |
| chr8 | 5035660 |
| chr9 | 6244471 |
| chr10 | 6894736 |
| chr11 | 6864194 |
| chr12 | 6648316 |
| chr13 | 4971039 |
| chr14 | 4910778 |
| chr15 | 5012159 |
| chr16 | 3938417 |
| chr17 | 2999617 |
| chr18 | 2461130 |
| chr19 | 2674432 |
| chr20 | 2573616 |
| chr21 | 1924598 |
| chr22 | 5014034 |
| chrUn_NW_026528016v1 | 24 |
| chrUn_NW_026528017v1 | 91 |
| chrUn_NW_026528021v1 | 518 |
| chrUn_NW_026528026v1 | 472 |
| chrUn_NW_026528029v1 | 421 |
| chrUn_NW_026528038v1 | 274 |
| chrUn_NW_026528039v1 | 397 |
| chrUn_NW_026528065v1 | 254 |
| chrUn_NW_026528075v1 | 158 |
| chrUn_NW_026528103v1 | 45 |
| chrUn_NW_026528123v1 | 5 |
| chrUn_NW_026528125v1 | 80 |
| chrUn_NW_026528140v1 | 505 |
| chrUn_NW_026528210v1 | 110 |
| chrUn_NW_026528215v1 | 135 |
| chrUn_NW_026528217v1 | 4 |
| chrUn_NW_026528218v1 | 8 |
| chrUn_NW_026528219v1 | 9 |
| chrUn_NW_026528220v1 | 1 |
| chrUn_NW_026528221v1 | 3 |
| chrUn_NW_026528222v1 | 2 |
| chrUn_NW_026528224v1 | 6 |
| chrUn_NW_026528225v1 | 43 |
| chrUn_NW_026528226v1 | 87 |
| chrUn_NW_026528228v1 | 128 |
| chrUn_NW_026528230v1 | 183 |
| chrUn_NW_026528232v1 | 1082 |
| chrUn_NW_026528259v1 | 5 |
| chrUn_NW_026528278v1 | 368 |
| chrUn_NW_026528285v1 | 33 |
| chrUn_NW_026528292v1 | 8 |
| chrUn_NW_026528295v1 | 201 |
| chrUn_NW_026528296v1 | 8193 |
| chrUn_NW_026528310v1 | 130 |
| chrUn_NW_026528320v1 | 17 |
| chrUn_NW_026528327v1 | 21 |
| chrUn_NW_026528332v1 | 20 |
| chrUn_NW_026528335v1 | 11 |
| chrUn_NW_026528338v1 | 38 |
| chrUn_NW_026528339v1 | 33 |
| chrUn_NW_026528345v1 | 33 |
| chrUn_NW_026528347v1 | 6 |
| chrUn_NW_026528350v1 | 25 |
| chrUn_NW_026528353v1 | 23 |
| chrUn_NW_026528356v1 | 22 |
| chrUn_NW_026528358v1 | 2 |
| chrUn_NW_026528360v1 | 9 |
| chrUn_NW_026528363v1 | 196 |
| chrUn_NW_026528370v1 | 126 |
| chrUn_NW_026528371v1 | 538 |
| chrUn_NW_026528372v1 | 224 |
| chrUn_NW_026528373v1 | 650 |
| chrUn_NW_026528378v1 | 6 |
| chrUn_NW_026528380v1 | 7 |
| chrUn_NW_026528381v1 | 1 |
| chrUn_NW_026528382v1 | 4 |
| chrUn_NW_026528384v1 | 13 |
| chrUn_NW_026528385v1 | 23 |
| chrUn_NW_026528390v1 | 19 |
| chrUn_NW_026528393v1 | 10 |
| chrUn_NW_026528396v1 | 1 |
| chrUn_NW_026528397v1 | 21 |
| chrUn_NW_026528402v1 | 1 |
| chrUn_NW_026528403v1 | 12 |
| chrUn_NW_026528404v1 | 1 |
| chrUn_NW_026528408v1 | 3 |
| chrUn_NW_026528409v1 | 11 |
| chrUn_NW_026528412v1 | 5 |
| chrUn_NW_026528413v1 | 2 |
| chrUn_NW_026528416v1 | 3 |
| chrUn_NW_026528419v1 | 3 |
| chrUn_NW_026528420v1 | 3 |
| chrUn_NW_026528423v1 | 51 |
| chrUn_NW_026528431v1 | 249 |
| chrUn_NW_026528432v1 | 521 |
| chrUn_NW_026528433v1 | 4256 |
| chrUn_NW_026528440v1 | 10 |
| chrUn_NW_026528471v1 | 1 |
| chrUn_NW_026528480v1 | 484 |
| chrUn_NW_026528558v1 | 1533 |
| chrUn_NW_026528559v1 | 56 |
| chrUn_NW_026528561v1 | 2 |
| chrUn_NW_026528588v1 | 9 |
| chrUn_NW_026528589v1 | 15 |
| chrUn_NW_026528590v1 | 899 |
| chrUn_NW_026528596v1 | 2335 |
| chrUn_NW_026528609v1 | 20 |
| chrUn_NW_026528611v1 | 10 |
| chrUn_NW_026528615v1 | 6 |
| chrUn_NW_026528621v1 | 226 |
| chrUn_NW_026528631v1 | 63 |
| chrUn_NW_026528634v1 | 251 |
| chrUn_NW_026528635v1 | 3 |
| chrUn_NW_026528644v1 | 5 |
| chrUn_NW_026528650v1 | 13 |
| chrUn_NW_026528661v1 | 18 |
| chrUn_NW_026528668v1 | 22 |
| chrUn_NW_026528670v1 | 5 |
| chrUn_NW_026528677v1 | 16 |
| chrUn_NW_026528708v1 | 9 |
| chrUn_NW_026528719v1 | 465 |
| chrUn_NW_026528737v1 | 22 |
| chrUn_NW_026528739v1 | 9 |
| chrUn_NW_026528740v1 | 1 |
| chrUn_NW_026528741v1 | 2 |
| chrUn_NW_026528745v1 | 17 |
| chrUn_NW_026528748v1 | 7 |
| chrUn_NW_026528750v1 | 17 |
| chrUn_NW_026528752v1 | 2 |
| chrUn_NW_026528754v1 | 12 |
| chrUn_NW_026528755v1 | 94 |
| chrUn_NW_026528772v1 | 14 |
| chrUn_NW_026528775v1 | 9 |
| chrUn_NW_026528777v1 | 4 |
| chrUn_NW_026528784v1 | 6 |
| chrUn_NW_026528785v1 | 12 |
| chrUn_NW_026528786v1 | 21 |
| chrUn_NW_026528788v1 | 7 |
| chrUn_NW_026528793v1 | 117 |
| chrUn_NW_026528795v1 | 81 |
| chrUn_NW_026528796v1 | 243 |
| chrUn_NW_026528797v1 | 3218 |
| chrUn_NW_026528798v1 | 890 |
| chrUn_NW_026528799v1 | 209 |
| chrUn_NW_026528880v1 | 19 |
| chrUn_NW_026528882v1 | 8 |
| chrUn_NW_026528883v1 | 1 |
| chrUn_NW_026528884v1 | 6 |
| chrUn_NW_026528885v1 | 7 |
| chrUn_NW_026528887v1 | 42 |
| chrUn_NW_026528888v1 | 13 |
| chrUn_NW_026528889v1 | 11 |
| chrUn_NW_026528891v1 | 31 |
| chrUn_NW_026528893v1 | 10 |
| chrUn_NW_026528894v1 | 427 |
| chrUn_NW_026528896v1 | 2 |
| chrUn_NW_026528899v1 | 17 |
| chrUn_NW_026528900v1 | 87 |
| chrUn_NW_026528902v1 | 124 |
| chrUn_NW_026528903v1 | 753 |
| chrUn_NW_026528917v1 | 189 |
| chrUn_NW_026528926v1 | 97 |
| chrUn_NW_026528928v1 | 831 |
| chrUn_NW_026528937v1 | 49 |
| chrUn_NW_026528938v1 | 5 |
| chrUn_NW_026528950v1 | 9 |
| chrUn_NW_026528952v1 | 11 |
| chrUn_NW_026528957v1 | 760 |
| chrUn_NW_026528960v1 | 246 |
| chrUn_NW_026528975v1 | 170 |
| chrUn_NW_026528984v1 | 28 |
| chrUn_NW_026528985v1 | 9 |
| chrUn_NW_026528987v1 | 7 |
| chrUn_NW_026528988v1 | 117 |
| chrUn_NW_026528989v1 | 9 |
| chrUn_NW_026528996v1 | 29 |
| chrUn_NW_026529007v1 | 346 |
| chrUn_NW_026529008v1 | 3009 |
| chrUn_NW_026529013v1 | 78 |
| chrUn_NW_026529015v1 | 126 |
| chrUn_NW_026529016v1 | 989 |
| chrUn_NW_026529060v1 | 1222 |
| chrUn_NW_026529081v1 | 174 |
| chrUn_NW_026529085v1 | 407 |
| chrX | 3471226 |
| chrX_NW_026527892v1_random | 345 |
| chrX_NW_026527894v1_random | 569 |
| chrX_NW_026527897v1_random | 176 |
| chrY | 16497 |
| chrY_NW_026527911v1_random | 10 |
| chrY_NW_026527913v1_random | 41 |
| chrY_NW_026527914v1_random | 419 |
| chrY_NW_026527915v1_random | 4 |
| chrY_NW_026527919v1_random | 22 |
| chrY_NW_026527927v1_random | 3 |
| chrY_NW_026527932v1_random | 4 |
| chrY_NW_026527938v1_random | 490 |
| chrY_NW_026527939v1_random | 23 |
| chrY_NW_026527942v1_random | 5 |
| chrY_NW_026527949v1_random | 1376 |
| chrY_NW_026527950v1_random | 856 |
| chrY_NW_026527951v1_random | 122 |
| chrY_NW_026527955v1_random | 76 |
| chrY_NW_026527956v1_random | 7128 |
| chrY_NW_026527958v1_random | 3568 |
| chrY_NW_026527960v1_random | 64 |
| chrY_NW_026527961v1_random | 197 |
| chrY_NW_026527966v1_random | 19505 |
| chrY_NW_026527967v1_random | 110 |
| chrY_NW_026527968v1_random | 1182 |
| chrY_NW_026527969v1_random | 4 |
| chrY_NW_026527980v1_random | 73 |
Fragment lengths
| fragments | min | max | mean | median | |
|---|---|---|---|---|---|
| fragments | 129228495 | 1 | 5039 | 132.45 | 99 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| P0065_2.h5ad.gz | 1.19 GB | af852a34bc1c98c8f859cd6f973fa440 |
| P0065_2.h5ad.gz.tbi | 821.48 KB | 22e73f8b05526b4c0b213af277aa27c6 |
| fragment_count_dist_plot.py | 853.0 B | 9d735ee8c687286d50484e7f1e398e60 |
| genomic_resource.yaml | 1.42 KB | eb4ef6634de10f71206a50a99cdeea71 |
| statistics/ |