Resource
| Id | summary/johansen2025Crossspecies/atac_fragments/marmoset/P0074_2 |
|---|---|
| Type | fragment_score |
| Version | 0 |
| Summary | ATAC fragments for marmoset from library P0074_2 |
| Description | |
| Labels |
|
Scores (2)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| cell | str |
cell |
 |
AAGCGAATCGCTAAGT-P0074_2, ATCACTAAGGTGCTGC-P0074_2, TGACTTAAGTTTGGTA-P0074_2, TGAGGAGGTTGCACAA-P0074_2, TGAGGCACAAATGCCC-P0074_2 (top 5 of 5330 values) | ||
| count | int |
count |
 |
[1, 1] |
|
n counts fragments; sd is the population standard deviation.
Fragments
| Chromosome | Fragments |
|---|---|
| all chromosomes | 361002782 |
| chr1 | 29017586 |
| chr2 | 24455111 |
| chr3 | 17668564 |
| chr4 | 19289687 |
| chr5 | 29197535 |
| chr6 | 18640725 |
| chr7 | 23381941 |
| chr8 | 14451948 |
| chr9 | 18019113 |
| chr10 | 19066959 |
| chr11 | 19280974 |
| chr12 | 18759067 |
| chr13 | 14084858 |
| chr14 | 13772790 |
| chr15 | 13950402 |
| chr16 | 11162474 |
| chr17 | 8287386 |
| chr18 | 6744677 |
| chr19 | 7565156 |
| chr20 | 6860010 |
| chr21 | 5354629 |
| chr22 | 12979312 |
| chrUn_NW_026528016v1 | 32 |
| chrUn_NW_026528017v1 | 129 |
| chrUn_NW_026528021v1 | 1460 |
| chrUn_NW_026528026v1 | 801 |
| chrUn_NW_026528029v1 | 826 |
| chrUn_NW_026528038v1 | 863 |
| chrUn_NW_026528039v1 | 1274 |
| chrUn_NW_026528065v1 | 383 |
| chrUn_NW_026528075v1 | 217 |
| chrUn_NW_026528103v1 | 49 |
| chrUn_NW_026528123v1 | 7 |
| chrUn_NW_026528125v1 | 85 |
| chrUn_NW_026528140v1 | 1212 |
| chrUn_NW_026528210v1 | 216 |
| chrUn_NW_026528215v1 | 368 |
| chrUn_NW_026528217v1 | 4 |
| chrUn_NW_026528218v1 | 9 |
| chrUn_NW_026528219v1 | 28 |
| chrUn_NW_026528220v1 | 3 |
| chrUn_NW_026528221v1 | 3 |
| chrUn_NW_026528222v1 | 5 |
| chrUn_NW_026528224v1 | 12 |
| chrUn_NW_026528225v1 | 132 |
| chrUn_NW_026528226v1 | 161 |
| chrUn_NW_026528228v1 | 291 |
| chrUn_NW_026528230v1 | 384 |
| chrUn_NW_026528232v1 | 3017 |
| chrUn_NW_026528259v1 | 10 |
| chrUn_NW_026528278v1 | 1390 |
| chrUn_NW_026528285v1 | 56 |
| chrUn_NW_026528292v1 | 34 |
| chrUn_NW_026528295v1 | 313 |
| chrUn_NW_026528296v1 | 24176 |
| chrUn_NW_026528310v1 | 215 |
| chrUn_NW_026528320v1 | 32 |
| chrUn_NW_026528327v1 | 22 |
| chrUn_NW_026528332v1 | 42 |
| chrUn_NW_026528335v1 | 16 |
| chrUn_NW_026528338v1 | 66 |
| chrUn_NW_026528339v1 | 70 |
| chrUn_NW_026528345v1 | 40 |
| chrUn_NW_026528347v1 | 16 |
| chrUn_NW_026528350v1 | 30 |
| chrUn_NW_026528353v1 | 49 |
| chrUn_NW_026528356v1 | 32 |
| chrUn_NW_026528358v1 | 3 |
| chrUn_NW_026528360v1 | 3 |
| chrUn_NW_026528363v1 | 310 |
| chrUn_NW_026528370v1 | 206 |
| chrUn_NW_026528371v1 | 1849 |
| chrUn_NW_026528372v1 | 661 |
| chrUn_NW_026528373v1 | 1660 |
| chrUn_NW_026528378v1 | 15 |
| chrUn_NW_026528380v1 | 14 |
| chrUn_NW_026528381v1 | 1 |
| chrUn_NW_026528382v1 | 3 |
| chrUn_NW_026528384v1 | 42 |
| chrUn_NW_026528385v1 | 58 |
| chrUn_NW_026528390v1 | 22 |
| chrUn_NW_026528393v1 | 30 |
| chrUn_NW_026528396v1 | 7 |
| chrUn_NW_026528397v1 | 24 |
| chrUn_NW_026528402v1 | 2 |
| chrUn_NW_026528403v1 | 12 |
| chrUn_NW_026528404v1 | 2 |
| chrUn_NW_026528408v1 | 8 |
| chrUn_NW_026528409v1 | 24 |
| chrUn_NW_026528412v1 | 25 |
| chrUn_NW_026528413v1 | 9 |
| chrUn_NW_026528416v1 | 13 |
| chrUn_NW_026528419v1 | 1 |
| chrUn_NW_026528420v1 | 5 |
| chrUn_NW_026528423v1 | 118 |
| chrUn_NW_026528431v1 | 483 |
| chrUn_NW_026528432v1 | 774 |
| chrUn_NW_026528433v1 | 6088 |
| chrUn_NW_026528440v1 | 13 |
| chrUn_NW_026528471v1 | 1 |
| chrUn_NW_026528480v1 | 798 |
| chrUn_NW_026528558v1 | 2105 |
| chrUn_NW_026528559v1 | 92 |
| chrUn_NW_026528561v1 | 2 |
| chrUn_NW_026528588v1 | 21 |
| chrUn_NW_026528589v1 | 24 |
| chrUn_NW_026528590v1 | 2348 |
| chrUn_NW_026528596v1 | 3391 |
| chrUn_NW_026528609v1 | 35 |
| chrUn_NW_026528611v1 | 17 |
| chrUn_NW_026528615v1 | 17 |
| chrUn_NW_026528621v1 | 412 |
| chrUn_NW_026528631v1 | 185 |
| chrUn_NW_026528634v1 | 398 |
| chrUn_NW_026528635v1 | 14 |
| chrUn_NW_026528644v1 | 12 |
| chrUn_NW_026528650v1 | 35 |
| chrUn_NW_026528656v1 | 2 |
| chrUn_NW_026528660v1 | 5 |
| chrUn_NW_026528661v1 | 40 |
| chrUn_NW_026528668v1 | 31 |
| chrUn_NW_026528670v1 | 5 |
| chrUn_NW_026528677v1 | 59 |
| chrUn_NW_026528708v1 | 12 |
| chrUn_NW_026528719v1 | 694 |
| chrUn_NW_026528737v1 | 74 |
| chrUn_NW_026528739v1 | 2 |
| chrUn_NW_026528740v1 | 1 |
| chrUn_NW_026528741v1 | 1 |
| chrUn_NW_026528745v1 | 25 |
| chrUn_NW_026528748v1 | 8 |
| chrUn_NW_026528749v1 | 2 |
| chrUn_NW_026528750v1 | 26 |
| chrUn_NW_026528751v1 | 1 |
| chrUn_NW_026528752v1 | 1 |
| chrUn_NW_026528754v1 | 25 |
| chrUn_NW_026528755v1 | 186 |
| chrUn_NW_026528772v1 | 21 |
| chrUn_NW_026528775v1 | 19 |
| chrUn_NW_026528777v1 | 11 |
| chrUn_NW_026528784v1 | 24 |
| chrUn_NW_026528785v1 | 25 |
| chrUn_NW_026528786v1 | 32 |
| chrUn_NW_026528788v1 | 18 |
| chrUn_NW_026528791v1 | 7 |
| chrUn_NW_026528792v1 | 2 |
| chrUn_NW_026528793v1 | 286 |
| chrUn_NW_026528795v1 | 282 |
| chrUn_NW_026528796v1 | 542 |
| chrUn_NW_026528797v1 | 8607 |
| chrUn_NW_026528798v1 | 2301 |
| chrUn_NW_026528799v1 | 450 |
| chrUn_NW_026528880v1 | 56 |
| chrUn_NW_026528882v1 | 19 |
| chrUn_NW_026528883v1 | 4 |
| chrUn_NW_026528884v1 | 25 |
| chrUn_NW_026528885v1 | 10 |
| chrUn_NW_026528887v1 | 120 |
| chrUn_NW_026528888v1 | 44 |
| chrUn_NW_026528889v1 | 24 |
| chrUn_NW_026528891v1 | 70 |
| chrUn_NW_026528893v1 | 16 |
| chrUn_NW_026528894v1 | 888 |
| chrUn_NW_026528896v1 | 7 |
| chrUn_NW_026528899v1 | 30 |
| chrUn_NW_026528900v1 | 212 |
| chrUn_NW_026528902v1 | 277 |
| chrUn_NW_026528903v1 | 2480 |
| chrUn_NW_026528917v1 | 570 |
| chrUn_NW_026528926v1 | 180 |
| chrUn_NW_026528928v1 | 1183 |
| chrUn_NW_026528937v1 | 54 |
| chrUn_NW_026528938v1 | 8 |
| chrUn_NW_026528950v1 | 24 |
| chrUn_NW_026528952v1 | 13 |
| chrUn_NW_026528957v1 | 1030 |
| chrUn_NW_026528960v1 | 572 |
| chrUn_NW_026528975v1 | 222 |
| chrUn_NW_026528984v1 | 146 |
| chrUn_NW_026528985v1 | 10 |
| chrUn_NW_026528986v1 | 3 |
| chrUn_NW_026528987v1 | 19 |
| chrUn_NW_026528988v1 | 531 |
| chrUn_NW_026528989v1 | 52 |
| chrUn_NW_026528990v1 | 1 |
| chrUn_NW_026528994v1 | 1 |
| chrUn_NW_026528995v1 | 4 |
| chrUn_NW_026528996v1 | 67 |
| chrUn_NW_026529007v1 | 824 |
| chrUn_NW_026529008v1 | 7932 |
| chrUn_NW_026529013v1 | 78 |
| chrUn_NW_026529015v1 | 164 |
| chrUn_NW_026529016v1 | 1432 |
| chrUn_NW_026529060v1 | 2721 |
| chrUn_NW_026529081v1 | 445 |
| chrUn_NW_026529085v1 | 1254 |
| chrX | 8826415 |
| chrX_NW_026527892v1_random | 895 |
| chrX_NW_026527894v1_random | 1785 |
| chrX_NW_026527897v1_random | 315 |
| chrY | 42544 |
| chrY_NW_026527911v1_random | 45 |
| chrY_NW_026527913v1_random | 177 |
| chrY_NW_026527914v1_random | 1190 |
| chrY_NW_026527915v1_random | 5 |
| chrY_NW_026527916v1_random | 1 |
| chrY_NW_026527919v1_random | 59 |
| chrY_NW_026527927v1_random | 7 |
| chrY_NW_026527932v1_random | 18 |
| chrY_NW_026527938v1_random | 808 |
| chrY_NW_026527939v1_random | 57 |
| chrY_NW_026527942v1_random | 7 |
| chrY_NW_026527949v1_random | 4508 |
| chrY_NW_026527950v1_random | 2010 |
| chrY_NW_026527951v1_random | 208 |
| chrY_NW_026527955v1_random | 152 |
| chrY_NW_026527956v1_random | 5960 |
| chrY_NW_026527958v1_random | 2600 |
| chrY_NW_026527960v1_random | 152 |
| chrY_NW_026527961v1_random | 467 |
| chrY_NW_026527966v1_random | 19123 |
| chrY_NW_026527967v1_random | 410 |
| chrY_NW_026527968v1_random | 3156 |
| chrY_NW_026527969v1_random | 27 |
| chrY_NW_026527980v1_random | 156 |
Fragment lengths
| fragments | min | max | mean | median | |
|---|---|---|---|---|---|
| fragments | 361002782 | 1 | 5040 | 147.99 | 134 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| P0074_2.gz | 3.34 GB | 404f66d29a4e456c2c3a78e8c8a9f09c |
| P0074_2.gz.tbi | 1.33 MB | 33eb95ae3c750133b2c5df56a2eb099b |
| fragment_count_dist_plot.py | 853.0 B | 9d735ee8c687286d50484e7f1e398e60 |
| genomic_resource.yaml | 1.41 KB | 31edbca2a5f7b8ca35bb14c020e0fa4f |
| statistics/ |