Resource
| Id | summary/johansen2025Crossspecies/atac_fragments/marmoset/P0074_3.h5ad |
|---|---|
| Type | fragment_score |
| Version | 0 |
| Summary | ATAC fragments for marmoset from library P0074_3.h5ad |
| Description | |
| Labels |
|
Scores (2)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| cell | str |
cell |
 |
CTGAATATCGGTTCCT-P0074_3, GCAAGCCTCGATATTG-P0074_3, AGTAATGCAGGCTACT-P0074_3, GCACGAACAATATGGA-P0074_3, TACAAGCTCCATTACT-P0074_3 (top 5 of 5583 values) | ||
| count | int |
count |
 |
[1, 1] |
|
n counts fragments; sd is the population standard deviation.
Fragments
| Chromosome | Fragments |
|---|---|
| all chromosomes | 284307685 |
| chr1 | 22363009 |
| chr2 | 18574942 |
| chr3 | 13097001 |
| chr4 | 15704994 |
| chr5 | 23593943 |
| chr6 | 13968957 |
| chr7 | 18578651 |
| chr8 | 11161087 |
| chr9 | 14342770 |
| chr10 | 15833385 |
| chr11 | 15503525 |
| chr12 | 14936075 |
| chr13 | 10983333 |
| chr14 | 10911182 |
| chr15 | 11042776 |
| chr16 | 8170419 |
| chr17 | 6190372 |
| chr18 | 5550170 |
| chr19 | 6077645 |
| chr20 | 5546901 |
| chr21 | 3993460 |
| chr22 | 11608827 |
| chrUn_NW_026528016v1 | 24 |
| chrUn_NW_026528017v1 | 79 |
| chrUn_NW_026528021v1 | 1060 |
| chrUn_NW_026528026v1 | 448 |
| chrUn_NW_026528029v1 | 568 |
| chrUn_NW_026528038v1 | 639 |
| chrUn_NW_026528039v1 | 910 |
| chrUn_NW_026528065v1 | 345 |
| chrUn_NW_026528075v1 | 150 |
| chrUn_NW_026528103v1 | 38 |
| chrUn_NW_026528123v1 | 5 |
| chrUn_NW_026528125v1 | 57 |
| chrUn_NW_026528140v1 | 598 |
| chrUn_NW_026528210v1 | 132 |
| chrUn_NW_026528215v1 | 178 |
| chrUn_NW_026528217v1 | 1 |
| chrUn_NW_026528218v1 | 8 |
| chrUn_NW_026528219v1 | 9 |
| chrUn_NW_026528221v1 | 3 |
| chrUn_NW_026528222v1 | 5 |
| chrUn_NW_026528224v1 | 6 |
| chrUn_NW_026528225v1 | 47 |
| chrUn_NW_026528226v1 | 167 |
| chrUn_NW_026528228v1 | 195 |
| chrUn_NW_026528230v1 | 241 |
| chrUn_NW_026528232v1 | 3882 |
| chrUn_NW_026528259v1 | 5 |
| chrUn_NW_026528278v1 | 750 |
| chrUn_NW_026528285v1 | 53 |
| chrUn_NW_026528292v1 | 18 |
| chrUn_NW_026528295v1 | 186 |
| chrUn_NW_026528296v1 | 18142 |
| chrUn_NW_026528310v1 | 104 |
| chrUn_NW_026528320v1 | 24 |
| chrUn_NW_026528327v1 | 12 |
| chrUn_NW_026528332v1 | 25 |
| chrUn_NW_026528335v1 | 9 |
| chrUn_NW_026528338v1 | 39 |
| chrUn_NW_026528339v1 | 36 |
| chrUn_NW_026528345v1 | 16 |
| chrUn_NW_026528347v1 | 5 |
| chrUn_NW_026528350v1 | 13 |
| chrUn_NW_026528353v1 | 24 |
| chrUn_NW_026528356v1 | 8 |
| chrUn_NW_026528358v1 | 3 |
| chrUn_NW_026528360v1 | 2 |
| chrUn_NW_026528363v1 | 164 |
| chrUn_NW_026528370v1 | 258 |
| chrUn_NW_026528371v1 | 1975 |
| chrUn_NW_026528372v1 | 271 |
| chrUn_NW_026528373v1 | 1015 |
| chrUn_NW_026528378v1 | 7 |
| chrUn_NW_026528380v1 | 9 |
| chrUn_NW_026528382v1 | 3 |
| chrUn_NW_026528384v1 | 14 |
| chrUn_NW_026528385v1 | 32 |
| chrUn_NW_026528390v1 | 15 |
| chrUn_NW_026528393v1 | 7 |
| chrUn_NW_026528396v1 | 3 |
| chrUn_NW_026528397v1 | 9 |
| chrUn_NW_026528402v1 | 3 |
| chrUn_NW_026528403v1 | 5 |
| chrUn_NW_026528404v1 | 1 |
| chrUn_NW_026528408v1 | 3 |
| chrUn_NW_026528409v1 | 10 |
| chrUn_NW_026528412v1 | 6 |
| chrUn_NW_026528413v1 | 2 |
| chrUn_NW_026528416v1 | 4 |
| chrUn_NW_026528419v1 | 4 |
| chrUn_NW_026528420v1 | 1 |
| chrUn_NW_026528423v1 | 44 |
| chrUn_NW_026528431v1 | 254 |
| chrUn_NW_026528432v1 | 563 |
| chrUn_NW_026528433v1 | 6792 |
| chrUn_NW_026528440v1 | 8 |
| chrUn_NW_026528471v1 | 1 |
| chrUn_NW_026528480v1 | 384 |
| chrUn_NW_026528558v1 | 1291 |
| chrUn_NW_026528559v1 | 63 |
| chrUn_NW_026528561v1 | 3 |
| chrUn_NW_026528588v1 | 10 |
| chrUn_NW_026528589v1 | 15 |
| chrUn_NW_026528590v1 | 1078 |
| chrUn_NW_026528596v1 | 1841 |
| chrUn_NW_026528609v1 | 31 |
| chrUn_NW_026528611v1 | 10 |
| chrUn_NW_026528615v1 | 9 |
| chrUn_NW_026528621v1 | 432 |
| chrUn_NW_026528631v1 | 246 |
| chrUn_NW_026528634v1 | 184 |
| chrUn_NW_026528635v1 | 4 |
| chrUn_NW_026528644v1 | 8 |
| chrUn_NW_026528650v1 | 24 |
| chrUn_NW_026528656v1 | 1 |
| chrUn_NW_026528660v1 | 1 |
| chrUn_NW_026528661v1 | 18 |
| chrUn_NW_026528668v1 | 21 |
| chrUn_NW_026528677v1 | 17 |
| chrUn_NW_026528708v1 | 4 |
| chrUn_NW_026528719v1 | 545 |
| chrUn_NW_026528737v1 | 24 |
| chrUn_NW_026528739v1 | 1 |
| chrUn_NW_026528740v1 | 1 |
| chrUn_NW_026528741v1 | 1 |
| chrUn_NW_026528745v1 | 11 |
| chrUn_NW_026528748v1 | 4 |
| chrUn_NW_026528749v1 | 1 |
| chrUn_NW_026528750v1 | 12 |
| chrUn_NW_026528751v1 | 1 |
| chrUn_NW_026528752v1 | 3 |
| chrUn_NW_026528754v1 | 15 |
| chrUn_NW_026528755v1 | 79 |
| chrUn_NW_026528772v1 | 16 |
| chrUn_NW_026528775v1 | 11 |
| chrUn_NW_026528777v1 | 8 |
| chrUn_NW_026528784v1 | 7 |
| chrUn_NW_026528785v1 | 6 |
| chrUn_NW_026528786v1 | 14 |
| chrUn_NW_026528788v1 | 4 |
| chrUn_NW_026528791v1 | 1 |
| chrUn_NW_026528792v1 | 2 |
| chrUn_NW_026528793v1 | 141 |
| chrUn_NW_026528795v1 | 115 |
| chrUn_NW_026528796v1 | 284 |
| chrUn_NW_026528797v1 | 3865 |
| chrUn_NW_026528798v1 | 2148 |
| chrUn_NW_026528799v1 | 649 |
| chrUn_NW_026528880v1 | 41 |
| chrUn_NW_026528882v1 | 7 |
| chrUn_NW_026528883v1 | 2 |
| chrUn_NW_026528884v1 | 8 |
| chrUn_NW_026528885v1 | 5 |
| chrUn_NW_026528887v1 | 42 |
| chrUn_NW_026528888v1 | 29 |
| chrUn_NW_026528889v1 | 11 |
| chrUn_NW_026528891v1 | 26 |
| chrUn_NW_026528893v1 | 3 |
| chrUn_NW_026528894v1 | 424 |
| chrUn_NW_026528896v1 | 1 |
| chrUn_NW_026528899v1 | 14 |
| chrUn_NW_026528900v1 | 146 |
| chrUn_NW_026528902v1 | 133 |
| chrUn_NW_026528903v1 | 1027 |
| chrUn_NW_026528917v1 | 315 |
| chrUn_NW_026528926v1 | 69 |
| chrUn_NW_026528928v1 | 769 |
| chrUn_NW_026528937v1 | 45 |
| chrUn_NW_026528938v1 | 10 |
| chrUn_NW_026528950v1 | 12 |
| chrUn_NW_026528952v1 | 11 |
| chrUn_NW_026528957v1 | 658 |
| chrUn_NW_026528960v1 | 1108 |
| chrUn_NW_026528975v1 | 145 |
| chrUn_NW_026528984v1 | 43 |
| chrUn_NW_026528985v1 | 7 |
| chrUn_NW_026528986v1 | 2 |
| chrUn_NW_026528987v1 | 10 |
| chrUn_NW_026528988v1 | 188 |
| chrUn_NW_026528989v1 | 14 |
| chrUn_NW_026528992v1 | 3 |
| chrUn_NW_026528994v1 | 1 |
| chrUn_NW_026528996v1 | 33 |
| chrUn_NW_026529007v1 | 759 |
| chrUn_NW_026529008v1 | 5315 |
| chrUn_NW_026529013v1 | 66 |
| chrUn_NW_026529015v1 | 74 |
| chrUn_NW_026529016v1 | 920 |
| chrUn_NW_026529060v1 | 2670 |
| chrUn_NW_026529081v1 | 142 |
| chrUn_NW_026529085v1 | 567 |
| chrX | 6444995 |
| chrX_NW_026527892v1_random | 397 |
| chrX_NW_026527894v1_random | 1035 |
| chrX_NW_026527897v1_random | 180 |
| chrY | 30413 |
| chrY_NW_026527909v1_random | 1 |
| chrY_NW_026527911v1_random | 41 |
| chrY_NW_026527913v1_random | 71 |
| chrY_NW_026527914v1_random | 818 |
| chrY_NW_026527915v1_random | 1 |
| chrY_NW_026527919v1_random | 33 |
| chrY_NW_026527927v1_random | 3 |
| chrY_NW_026527932v1_random | 6 |
| chrY_NW_026527938v1_random | 427 |
| chrY_NW_026527939v1_random | 26 |
| chrY_NW_026527942v1_random | 4 |
| chrY_NW_026527949v1_random | 3518 |
| chrY_NW_026527950v1_random | 1469 |
| chrY_NW_026527951v1_random | 97 |
| chrY_NW_026527955v1_random | 90 |
| chrY_NW_026527956v1_random | 4170 |
| chrY_NW_026527958v1_random | 2255 |
| chrY_NW_026527960v1_random | 39 |
| chrY_NW_026527961v1_random | 179 |
| chrY_NW_026527966v1_random | 12343 |
| chrY_NW_026527967v1_random | 139 |
| chrY_NW_026527968v1_random | 1131 |
| chrY_NW_026527969v1_random | 12 |
| chrY_NW_026527980v1_random | 77 |
Fragment lengths
| fragments | min | max | mean | median | |
|---|---|---|---|---|---|
| fragments | 284307685 | 1 | 5041 | 150.71 | 128 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| P0074_3.h5ad.gz | 2.61 GB | 7b8f2860dfa3465075e35d2632e613a0 |
| P0074_3.h5ad.gz.tbi | 1.15 MB | 84dcb59a050afb174d655220b685f52f |
| fragment_count_dist_plot.py | 853.0 B | 9d735ee8c687286d50484e7f1e398e60 |
| genomic_resource.yaml | 1.42 KB | b4913d8265a1c8d5382029f732fbca5e |
| statistics/ |