Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/AMY-SLEA-BNST_D1_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for AMY-SLEA-BNST_D1_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: AMY-SLEA-BNST_D1_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_AMY-SLEA-BNST_D1_GABA float

johansen2025Crossspecies_atac_human_AMY-SLEA-BNST_D1_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_AMY-SLEA-BNST_D1_GABA [0.872, 325]
n
210,334,990
mean
1.08
sd
0.664

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2103349906.39% 18916363
chr1 18443150 7.41% 1647624
chr2 17203170 7.10% 1553198
chr3 14155440 7.14% 1279087
chr4 11633880 6.12% 1061218
chr5 12274290 6.76% 1109843
chr6 11873130 6.95% 1074642
chr7 11344130 7.12% 1021773
chr8 10089650 6.95% 912646
chr9 8681720 6.27% 780098
chr10 10114330 7.56% 908221
chr11 10665910 7.90% 951968
chr12 10198280 7.65% 915416
chr13 6135770 5.37% 558479
chr14 6891150 6.44% 618732
chr15 6683160 6.55% 597255
chr16 7099060 7.86% 629472
chr17 7727070 9.28% 681189
chr18 5262080 6.55% 477106
chr19 5964510 10.18% 522891
chr20 5530850 8.58% 491343
chr21 2477190 5.30% 223985
chr22 3787180 7.45% 331981
chrX 5965390 3.82% 555397
chrY 92990 0.16% 9013
GL000009.2 950 0.47% 95
GL000194.1 5740 3.00% 526
GL000195.1 3200 1.75% 291
GL000205.2 10710 5.77% 944
GL000213.1 120 0.07% 12
GL000218.1 3400 2.11% 315
GL000219.1 10430 5.82% 938
KI270711.1 470 1.11% 47
KI270713.1 1650 4.05% 150
KI270721.1 120 0.12% 12
KI270727.1 430 0.10% 42
KI270728.1 3460 0.18% 334
KI270731.1 320 0.21% 30
KI270734.1 510 0.31% 50
668 contigs with no values (199229186 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18916363 10 120 11.12 10
global segment-length histogram

Files

Filename Size md5
AMY-SLEA-BNST_D1_GABA.bw 145.39 MB 4a66b54223a70e30ee2789fe6a947f5e
genomic_resource.yaml 1.14 KB d62414cc698dd661a88a9c776710d165
statistics/