Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/AMY-SLEA-BNST_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for AMY-SLEA-BNST_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: AMY-SLEA-BNST_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_AMY-SLEA-BNST_GABA float

johansen2025Crossspecies_atac_human_AMY-SLEA-BNST_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_AMY-SLEA-BNST_GABA [0.0824, 380]
n
1,224,915,020
mean
0.186
sd
0.292

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 122491502037.21% 99669642
chr1 102340260 41.11% 8334283
chr2 101735610 42.01% 8260772
chr3 84829400 42.78% 6890727
chr4 72968830 38.36% 5926804
chr5 73525900 40.50% 5973996
chr6 70778550 41.44% 5746997
chr7 67323240 42.25% 5473104
chr8 60233140 41.50% 4885817
chr9 49935560 36.08% 4061477
chr10 58984220 44.08% 4791333
chr11 59905880 44.35% 4883476
chr12 58622000 43.99% 4769719
chr13 38262570 33.46% 3106725
chr14 39243460 36.66% 3197120
chr15 37128370 36.40% 3016498
chr16 38185310 42.27% 3114398
chr17 40949100 49.18% 3352778
chr18 31894990 39.68% 2583941
chr19 29164630 49.75% 2393347
chr20 30685920 47.62% 2501187
chr21 14717830 31.51% 1193323
chr22 19300350 37.98% 1579828
chrX 43119930 27.63% 3535206
chrY 830070 1.45% 75908
GL000009.2 8190 4.06% 750
GL000194.1 35110 18.34% 2917
GL000195.1 22630 12.37% 1869
GL000205.2 56460 30.42% 4572
GL000213.1 1340 0.82% 121
GL000218.1 22200 13.78% 1846
GL000219.1 49740 27.76% 4082
KI270711.1 3880 9.19% 331
KI270713.1 9500 23.32% 789
KI270721.1 1620 1.61% 141
KI270726.1 230 0.53% 22
KI270727.1 4040 0.90% 351
KI270728.1 27970 1.49% 2469
KI270731.1 2560 1.70% 220
KI270734.1 4430 2.68% 398
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99669642 10 140 12.29 10
global segment-length histogram

Files

Filename Size md5
AMY-SLEA-BNST_GABA.bw 635.16 MB ecc6c7b7b192c75e5c9bd84fb6f290ea
genomic_resource.yaml 1.13 KB 57424645b007d71cb58d8ed75f1c765e
statistics/