Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Astrocyte/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Astrocyte cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Astrocyte
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Astrocyte float

johansen2025Crossspecies_atac_human_Astrocyte
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_Astrocyte [0.00136, 346]
n
2,695,952,037
mean
0.0455
sd
0.206

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 269595203781.90% 257080351
chr1 212837190 85.49% 20368227
chr2 225390250 93.06% 21489995
chr3 187395250 94.50% 17882279
chr4 178479090 93.83% 16953746
chr5 167766930 92.41% 15981175
chr6 161177220 94.36% 15371932
chr7 146783930 92.12% 13997966
chr8 135566230 93.40% 12938557
chr9 107424980 77.62% 10259500
chr10 124760530 93.25% 11927074
chr11 125437460 92.86% 12004947
chr12 125597860 94.24% 12012289
chr13 91511300 80.02% 8706760
chr14 84154530 78.62% 8053786
chr15 75346450 73.88% 7214187
chr16 72983420 80.79% 7001290
chr17 74839260 89.89% 7209703
chr18 71617430 89.11% 6831395
chr19 53247600 90.84% 5127150
chr20 59224910 91.90% 5686340
chr21 32921780 70.48% 3143696
chr22 33584040 66.09% 3244847
chrX 135697680 86.96% 12623671
chrY 11145400 19.48% 953544
GL000009.2 99969 49.56% 8707
GL000194.1 109290 57.08% 10062
GL000195.1 88860 48.58% 8272
GL000205.2 127820 68.87% 12134
GL000213.1 13440 8.18% 1142
GL000218.1 110480 68.56% 10063
GL000219.1 134298 74.94% 12763
KI270711.1 16890 40.01% 1505
KI270713.1 28800 70.68% 2703
KI270721.1 10430 10.40% 911
KI270726.1 13080 29.90% 1084
KI270727.1 32660 7.29% 2884
KI270728.1 232280 12.40% 20280
KI270731.1 16330 10.83% 1430
KI270734.1 26690 16.17% 2355
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 257080351 8 120 10.49 10
global segment-length histogram

Files

Filename Size md5
Astrocyte.bw 1.44 GB f3f3fcf7350616c64a723c7a69d2ef5a
genomic_resource.yaml 1.09 KB 1b572c45b896d0f1d2f88c77c61d412d
statistics/