Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/BAM/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for BAM cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: BAM
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_BAM float

johansen2025Crossspecies_atac_human_BAM
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_BAM [0.0825, 257]
n
524,246,220
mean
0.181
sd
0.477

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 52424622015.93% 44884005
chr1 43646740 17.53% 3724974
chr2 41829610 17.27% 3594070
chr3 34867110 17.58% 2996977
chr4 30575150 16.07% 2643081
chr5 30926920 17.04% 2658697
chr6 31013790 18.16% 2661301
chr7 27691970 17.38% 2373772
chr8 25466240 17.55% 2185772
chr9 21453750 15.50% 1831768
chr10 24691650 18.45% 2112520
chr11 26137810 19.35% 2229289
chr12 25684990 19.27% 2195126
chr13 16132080 14.11% 1390937
chr14 16748460 15.65% 1432702
chr15 15332180 15.03% 1307895
chr16 16451980 18.21% 1392030
chr17 20163950 24.22% 1693992
chr18 13392750 16.66% 1148792
chr19 15928700 27.17% 1337133
chr20 12910740 20.03% 1095599
chr21 7018960 15.03% 595782
chr22 8594310 16.91% 720690
chrX 16926410 10.85% 1500505
chrY 524830 0.92% 48980
GL000009.2 5550 2.75% 516
GL000194.1 13930 7.28% 1164
GL000195.1 12680 6.93% 1084
GL000205.2 37980 20.46% 3172
GL000213.1 580 0.35% 56
GL000218.1 8350 5.18% 744
GL000219.1 25920 14.46% 2226
KI270711.1 1960 4.64% 158
KI270713.1 6370 15.63% 526
KI270721.1 960 0.96% 88
KI270726.1 320 0.73% 32
KI270727.1 2260 0.50% 211
KI270728.1 16660 0.89% 1494
KI270731.1 570 0.38% 52
KI270734.1 1050 0.64% 98
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44884005 10 130 11.68 10
global segment-length histogram

Files

Filename Size md5
BAM.bw 260.04 MB 39dc7a691ffa972c60b90b1f8a39cf6b
genomic_resource.yaml 1.07 KB f7698ab020a1ff1e0d6f42244c468bc0
statistics/