Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/BF_SKOR1_Glut/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for BF_SKOR1_Glut cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: BF_SKOR1_Glut
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_BF_SKOR1_Glut float

johansen2025Crossspecies_atac_human_BF_SKOR1_Glut
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_BF_SKOR1_Glut [0.109, 280]
n
1,031,145,788
mean
0.225
sd
0.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103114578831.33% 84199082
chr1 87294910 35.06% 7119589
chr2 85805550 35.43% 6993209
chr3 70719140 35.66% 5768680
chr4 59744670 31.41% 4895589
chr5 61161760 33.69% 4997466
chr6 58327070 34.15% 4762553
chr7 57097910 35.83% 4663194
chr8 50185470 34.58% 4093807
chr9 43027750 31.09% 3508150
chr10 49820510 37.24% 4056680
chr11 50995960 37.75% 4168119
chr12 49508860 37.15% 4037965
chr13 31162270 27.25% 2548131
chr14 32854810 30.69% 2680830
chr15 31423150 30.81% 2553845
chr16 32464690 35.94% 2641341
chr17 36239600 43.53% 2958912
chr18 27340860 34.02% 2225911
chr19 25682540 43.81% 2103517
chr20 26344860 40.88% 2142663
chr21 12325480 26.39% 1004658
chr22 16980870 33.41% 1383322
chrX 33509780 21.47% 2789718
chrY 926720 1.62% 84425
GL000009.2 6450 3.20% 597
GL000194.1 26670 13.93% 2228
GL000195.1 15720 8.60% 1339
GL000205.2 45320 24.42% 3614
GL000213.1 580 0.35% 54
GL000218.1 18640 11.57% 1555
GL000219.1 41948 23.41% 3435
KI270711.1 3220 7.63% 284
KI270713.1 9180 22.53% 764
KI270721.1 1390 1.39% 119
KI270726.1 510 1.17% 48
KI270727.1 3230 0.72% 287
KI270728.1 22820 1.22% 2055
KI270731.1 1440 0.96% 129
KI270734.1 3480 2.11% 300
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84199082 8 150 12.25 10
global segment-length histogram

Files

Filename Size md5
BF_SKOR1_Glut.bw 567.44 MB 8011305863baecb258f4b08326326568
genomic_resource.yaml 1.11 KB 946b693cee66e7a15297d45f90e83968
statistics/