Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/B_cells/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for B_cells cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: B_cells
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_B_cells float

johansen2025Crossspecies_atac_human_B_cells

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_human_B_cells [3.07, 264]
n
21,492,650
mean
3.7
sd
2.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 214926500.65% 2003248
chr1 1897800 0.76% 175810
chr2 1650680 0.68% 154948
chr3 1446490 0.73% 136443
chr4 994890 0.52% 94507
chr5 1035370 0.57% 97269
chr6 1341370 0.79% 125109
chr7 1136260 0.71% 106884
chr8 950500 0.65% 89233
chr9 862050 0.62% 80209
chr10 1038070 0.78% 97478
chr11 1083960 0.80% 100302
chr12 1129740 0.85% 105249
chr13 534510 0.47% 50745
chr14 727610 0.68% 67519
chr15 617550 0.61% 57288
chr16 756100 0.84% 69344
chr17 1019260 1.22% 93116
chr18 444500 0.55% 42138
chr19 1035620 1.77% 92776
chr20 526990 0.82% 48871
chr21 246910 0.53% 23260
chr22 454480 0.89% 41614
chrX 532920 0.34% 50343
chrY 23610 0.04% 2289
GL000009.2 80 0.04% 8
GL000194.1 280 0.15% 27
GL000195.1 800 0.44% 73
GL000205.2 1510 0.81% 146
GL000218.1 180 0.11% 18
GL000219.1 1290 0.72% 115
KI270713.1 620 1.52% 53
KI270721.1 80 0.08% 8
KI270726.1 130 0.30% 12
KI270727.1 80 0.02% 8
KI270728.1 340 0.02% 34
KI270734.1 20 0.01% 2
670 contigs with no values (199542650 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2003248 10 120 10.73 10
global segment-length histogram

Files

Filename Size md5
B_cells.bw 15.55 MB 8b52daf453de6295e0bb37dc67c3c92a
genomic_resource.yaml 1.08 KB 132d294582a8a29bd6454c95b30e5d1e
statistics/