Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/COP/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for COP cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: COP
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_COP float

johansen2025Crossspecies_atac_human_COP
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_COP [0.229, 151]
n
340,602,610
mean
0.385
sd
0.546

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 34060261010.35% 29777357
chr1 29004710 11.65% 2524706
chr2 27950340 11.54% 2448769
chr3 23445350 11.82% 2053239
chr4 18605260 9.78% 1652665
chr5 19660630 10.83% 1730680
chr6 19154170 11.21% 1684841
chr7 18246380 11.45% 1596985
chr8 16336040 11.26% 1435051
chr9 14471850 10.46% 1259580
chr10 16676880 12.46% 1450299
chr11 17647490 13.06% 1529192
chr12 16531830 12.40% 1445086
chr13 9765940 8.54% 865680
chr14 10969630 10.25% 958726
chr15 10034430 9.84% 874310
chr16 11037150 12.22% 952275
chr17 12564660 15.09% 1077753
chr18 8544930 10.63% 751592
chr19 9954850 16.98% 851976
chr20 8762440 13.60% 757835
chr21 4303220 9.21% 375119
chr22 6106290 12.02% 520771
chrX 10398260 6.66% 940402
chrY 345400 0.60% 32449
GL000009.2 2390 1.18% 232
GL000194.1 9830 5.13% 846
GL000195.1 10700 5.85% 915
GL000205.2 21510 11.59% 1813
GL000213.1 140 0.09% 13
GL000218.1 4740 2.94% 430
GL000219.1 19900 11.11% 1717
KI270711.1 700 1.66% 63
KI270713.1 3560 8.74% 316
KI270721.1 720 0.72% 65
KI270726.1 20 0.05% 2
KI270727.1 1040 0.23% 96
KI270728.1 7790 0.42% 739
KI270731.1 300 0.20% 29
KI270734.1 1140 0.69% 100
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29777357 10 130 11.44 10
global segment-length histogram

Files

Filename Size md5
COP.bw 194.28 MB 5a883644c15b661f5b7ba441b7ff4318
genomic_resource.yaml 1.07 KB 0411526ce297e7302156ec288703ffea
statistics/