Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Endo/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Endo cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Endo
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Endo float

johansen2025Crossspecies_atac_human_Endo
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_Endo [0.0533, 307]
n
913,570,948
mean
0.126
sd
0.358

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 91357094827.75% 74946705
chr1 75961690 30.51% 6220117
chr2 74531840 30.77% 6101331
chr3 61544150 31.04% 5046227
chr4 52545160 27.62% 4323747
chr5 53832640 29.65% 4412144
chr6 53799470 31.50% 4416154
chr7 48853130 30.66% 3999326
chr8 44166620 30.43% 3613340
chr9 38630530 27.91% 3166652
chr10 43594450 32.58% 3564518
chr11 44326660 32.81% 3631575
chr12 44062530 33.06% 3610915
chr13 28824080 25.20% 2367058
chr14 29431340 27.49% 2408730
chr15 27704880 27.16% 2261855
chr16 28821460 31.90% 2360671
chr17 32492780 39.03% 2667629
chr18 23076540 28.71% 1882789
chr19 24982100 42.62% 2068860
chr20 23292500 36.14% 1900029
chr21 11709600 25.07% 958733
chr22 15655450 30.81% 1281606
chrX 30281530 19.41% 2553185
chrY 1202960 2.10% 108905
GL000009.2 12900 6.40% 1114
GL000194.1 31060 16.22% 2590
GL000195.1 24610 13.46% 2044
GL000205.2 61190 32.97% 5001
GL000213.1 930 0.57% 85
GL000218.1 22990 14.27% 1908
GL000219.1 44618 24.90% 3646
KI270711.1 3020 7.15% 265
KI270713.1 9440 23.17% 798
KI270721.1 1530 1.53% 132
KI270726.1 770 1.76% 73
KI270727.1 3280 0.73% 286
KI270728.1 25650 1.37% 2255
KI270731.1 1650 1.09% 142
KI270734.1 3220 1.95% 270
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74946705 8 140 12.19 10
global segment-length histogram

Files

Filename Size md5
Endo.bw 525.59 MB a449dfe96a2da3020adeac26802c94c4
genomic_resource.yaml 1.07 KB 2e6881e7f598f9b3254fe964757abf50
statistics/