Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Ependymal/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Ependymal cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Ependymal
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Ependymal float

johansen2025Crossspecies_atac_human_Ependymal
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_Ependymal [0.0218, 224]
n
1,493,653,908
mean
0.082
sd
0.275

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 149365390845.38% 123175150
chr1 122921510 49.37% 10172399
chr2 122438270 50.55% 10064525
chr3 103285690 52.09% 8487943
chr4 92081360 48.41% 7512915
chr5 89898370 49.52% 7367087
chr6 88594770 51.87% 7288898
chr7 81262830 51.00% 6670160
chr8 74339820 51.22% 6098049
chr9 61995560 44.80% 5140864
chr10 69707400 52.10% 5765987
chr11 73059840 54.08% 6055113
chr12 71414250 53.58% 5883618
chr13 48098120 42.06% 3922883
chr14 48987850 45.76% 4058771
chr15 44257910 43.39% 3662259
chr16 43961940 48.66% 3672147
chr17 48235350 57.94% 4075874
chr18 38974150 48.49% 3192902
chr19 33796990 57.66% 2845720
chr20 35213690 54.64% 2913541
chr21 18603390 39.83% 1533321
chr22 22372310 44.02% 1888871
chrX 58168010 37.28% 4727225
chrY 1639270 2.86% 145167
GL000009.2 20320 10.07% 1728
GL000194.1 39630 20.70% 3275
GL000195.1 33620 18.38% 2834
GL000205.2 73120 39.40% 6170
GL000213.1 1790 1.09% 157
GL000218.1 27420 17.02% 2282
GL000219.1 62138 34.68% 5017
KI270711.1 4510 10.68% 385
KI270713.1 15440 37.89% 1327
KI270721.1 3360 3.35% 285
KI270726.1 1440 3.29% 128
KI270727.1 6620 1.48% 579
KI270728.1 45960 2.45% 3889
KI270731.1 3270 2.17% 278
KI270734.1 6620 4.01% 577
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 123175150 8 150 12.13 10
global segment-length histogram

Files

Filename Size md5
Ependymal.bw 748.61 MB a6470e65fb88c601493cba8e84b27ed5
genomic_resource.yaml 1.09 KB 4acc0a0b564cda1249d40eab542a1754
statistics/