Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/GPe-NDB-SI_LHX6-LHX8-GBX1_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPe-NDB-SI_LHX6-LHX8-GBX1_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPe-NDB-SI_LHX6-LHX8-GBX1_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_GPe-NDB-SI_LHX6-LHX8-GBX1_GABA float

johansen2025Crossspecies_atac_human_GPe-NDB-SI_LHX6-LHX8-GBX1_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_GPe-NDB-SI_LHX6-LHX8-GBX1_GABA [0.0734, 275]
n
1,310,650,428
mean
0.182
sd
0.276

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 131065042839.82% 107435558
chr1 110363470 44.33% 9064605
chr2 109911850 45.38% 8991310
chr3 90878870 45.83% 7435679
chr4 77808330 40.91% 6358440
chr5 78836360 43.43% 6450323
chr6 75997460 44.49% 6213674
chr7 71710840 45.00% 5876208
chr8 64896450 44.71% 5301295
chr9 53718680 38.82% 4403966
chr10 63271430 47.29% 5183065
chr11 64613860 47.83% 5315216
chr12 63523330 47.66% 5209450
chr13 41157100 35.99% 3363694
chr14 41809050 39.06% 3428736
chr15 39415060 38.65% 3228091
chr16 40006630 44.29% 3288968
chr17 43136380 51.81% 3562102
chr18 34095870 42.42% 2784116
chr19 30555420 52.13% 2527693
chr20 32775320 50.86% 2695393
chr21 15539650 33.27% 1272362
chr22 20087950 39.53% 1660398
chrX 44842740 28.74% 3672117
chrY 1440250 2.52% 127128
GL000009.2 9210 4.57% 820
GL000194.1 35920 18.76% 2944
GL000195.1 20770 11.36% 1757
GL000205.2 56660 30.53% 4576
GL000213.1 1120 0.68% 100
GL000218.1 22830 14.17% 1913
GL000219.1 53128 29.65% 4377
KI270711.1 4300 10.19% 372
KI270713.1 10630 26.09% 901
KI270721.1 1790 1.78% 154
KI270726.1 750 1.71% 73
KI270727.1 4670 1.04% 406
KI270728.1 29580 1.58% 2557
KI270731.1 2080 1.38% 185
KI270734.1 4640 2.81% 394
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107435558 8 130 12.2 10
global segment-length histogram

Files

Filename Size md5
GPe-NDB-SI_LHX6-LHX8-GBX1_GABA.bw 672.88 MB bd7b9d3b95770d2d49b9120fb81b3c11
genomic_resource.yaml 1.17 KB 2e43702b1a96b3cc357814bd9420e7bd
statistics/