Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/GPe_MEIS2-SOX6_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPe_MEIS2-SOX6_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPe_MEIS2-SOX6_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_GPe_MEIS2-SOX6_GABA float

johansen2025Crossspecies_atac_human_GPe_MEIS2-SOX6_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_GPe_MEIS2-SOX6_GABA [0.049, 228]
n
1,552,648,578
mean
0.153
sd
0.258

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 155264857847.17% 129260939
chr1 129394970 51.97% 10815027
chr2 130790470 54.00% 10873528
chr3 108063920 54.50% 8981732
chr4 94435400 49.65% 7792970
chr5 94053690 51.81% 7793753
chr6 91076850 53.32% 7555206
chr7 85469170 53.64% 7116239
chr8 77255120 53.23% 6400397
chr9 63298880 45.74% 5274188
chr10 74497860 55.68% 6202265
chr11 75235710 55.69% 6302697
chr12 74678270 56.03% 6228022
chr13 49179020 43.00% 4056997
chr14 49808220 46.53% 4154917
chr15 46911120 46.00% 3921679
chr16 46916680 51.93% 3943629
chr17 49689060 59.68% 4199391
chr18 40793650 50.76% 3375358
chr19 34110290 58.19% 2885662
chr20 37610100 58.36% 3155022
chr21 18689260 40.01% 1552894
chr22 23166120 45.59% 1966590
chrX 55682130 35.68% 4552775
chrY 1572020 2.75% 137295
GL000009.2 8880 4.40% 817
GL000194.1 34260 17.89% 2841
GL000195.1 24370 13.32% 2061
GL000205.2 60030 32.35% 4869
GL000213.1 1370 0.83% 124
GL000218.1 21840 13.55% 1819
GL000219.1 58068 32.40% 4810
KI270711.1 5120 12.13% 425
KI270713.1 12310 30.21% 1059
KI270721.1 2560 2.55% 220
KI270726.1 750 1.71% 70
KI270727.1 5130 1.14% 440
KI270728.1 28380 1.52% 2509
KI270731.1 2130 1.41% 189
KI270734.1 5400 3.27% 453
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129260939 8 140 12.01 10
global segment-length histogram

Files

Filename Size md5
GPe_MEIS2-SOX6_GABA.bw 771.79 MB 47ef378a3b40ef0585591c45e456187f
genomic_resource.yaml 1.13 KB 97da7ffb23b63707fec6df7b1a5bc757
statistics/