Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/GPe_SOX6-CTXND1_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPe_SOX6-CTXND1_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPe_SOX6-CTXND1_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_GPe_SOX6-CTXND1_GABA float

johansen2025Crossspecies_atac_human_GPe_SOX6-CTXND1_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_GPe_SOX6-CTXND1_GABA [0.0555, 312]
n
1,470,936,318
mean
0.163
sd
0.271

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 147093631844.69% 121556447
chr1 123167750 49.47% 10207598
chr2 122655930 50.64% 10122089
chr3 101443520 51.16% 8367221
chr4 88899280 46.74% 7300495
chr5 89016060 49.03% 7329884
chr6 86182090 50.46% 7096583
chr7 80560460 50.56% 6656383
chr8 73296260 50.50% 6034425
chr9 60285770 43.56% 4981553
chr10 70657200 52.81% 5848718
chr11 72082040 53.36% 5985435
chr12 70588710 52.96% 5834450
chr13 46457460 40.62% 3819874
chr14 46724480 43.65% 3867373
chr15 43567100 42.72% 3604380
chr16 44259550 48.99% 3681142
chr17 47266750 56.77% 3950921
chr18 38565890 47.98% 3170444
chr19 34190870 58.33% 2864996
chr20 36142970 56.08% 3004717
chr21 17450440 37.36% 1441936
chr22 21984970 43.26% 1846143
chrX 52944720 33.93% 4322070
chrY 2231690 3.90% 191098
GL000009.2 10550 5.23% 936
GL000194.1 41110 21.47% 3449
GL000195.1 25220 13.79% 2126
GL000205.2 69550 37.47% 5901
GL000213.1 1550 0.94% 138
GL000218.1 26560 16.48% 2226
GL000219.1 63928 35.67% 5271
KI270711.1 4780 11.32% 409
KI270713.1 11610 28.49% 1003
KI270721.1 2110 2.10% 172
KI270726.1 1020 2.33% 97
KI270727.1 5620 1.25% 487
KI270728.1 43060 2.30% 3644
KI270731.1 2300 1.53% 205
KI270734.1 5390 3.27% 455
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 121556447 10 140 12.1 10
global segment-length histogram

Files

Filename Size md5
GPe_SOX6-CTXND1_GABA.bw 738.54 MB 954adab3160249d62477d0caeda33c26
genomic_resource.yaml 1.13 KB 026f570e33f5116fd058c4f5ab0dd1f5
statistics/