Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/GPi_Core/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPi_Core cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPi_Core
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_GPi_Core float

johansen2025Crossspecies_atac_human_GPi_Core
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_GPi_Core [0.172, 375]
n
815,414,860
mean
0.305
sd
0.354

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81541486024.77% 66848732
chr1 69676240 27.99% 5691221
chr2 67611860 27.92% 5542149
chr3 56263370 28.37% 4615271
chr4 46735810 24.57% 3864985
chr5 48171180 26.54% 3960052
chr6 46651930 27.31% 3835107
chr7 44794210 28.11% 3668870
chr8 39576300 27.27% 3247239
chr9 33825180 24.44% 2767870
chr10 39861290 29.79% 3254131
chr11 41301590 30.57% 3374333
chr12 39467280 29.61% 3231647
chr13 24660090 21.56% 2033871
chr14 26106500 24.39% 2138838
chr15 24868460 24.38% 2028897
chr16 25854140 28.62% 2103273
chr17 28291880 33.98% 2299719
chr18 20731610 25.79% 1702411
chr19 20440240 34.87% 1663309
chr20 20866510 32.38% 1696171
chr21 9618790 20.59% 788675
chr22 13199730 25.97% 1067702
chrX 25969110 16.64% 2193883
chrY 722410 1.26% 66521
GL000009.2 5120 2.54% 485
GL000194.1 19820 10.35% 1618
GL000195.1 13020 7.12% 1126
GL000205.2 34770 18.73% 2717
GL000213.1 810 0.49% 76
GL000218.1 12030 7.47% 1033
GL000219.1 30540 17.04% 2586
KI270711.1 2180 5.16% 190
KI270713.1 8360 20.52% 714
KI270721.1 1040 1.04% 95
KI270726.1 280 0.64% 27
KI270727.1 2810 0.63% 248
KI270728.1 14610 0.78% 1339
KI270731.1 1230 0.82% 114
KI270734.1 2530 1.53% 219
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66848732 10 140 12.2 10
global segment-length histogram

Files

Filename Size md5
GPi_Core.bw 348.77 MB f8b8d8212362c11105f33f64ff5294ad
genomic_resource.yaml 1.09 KB 891fe1c44d5b18f6df1a5898470c758e
statistics/