Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/GPi_Shell/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPi_Shell cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPi_Shell
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_GPi_Shell float

johansen2025Crossspecies_atac_human_GPi_Shell
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_GPi_Shell [0.813, 286]
n
238,001,390
mean
1.01
sd
0.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2380013907.23% 21092981
chr1 20731830 8.33% 1828298
chr2 19528750 8.06% 1735624
chr3 16391200 8.27% 1456985
chr4 12850040 6.76% 1154857
chr5 13735690 7.57% 1223880
chr6 13572750 7.95% 1209153
chr7 12770360 8.01% 1132651
chr8 11645620 8.02% 1037368
chr9 9982710 7.21% 882242
chr10 11460730 8.57% 1014323
chr11 12152690 9.00% 1068851
chr12 11824740 8.87% 1044975
chr13 6897150 6.03% 618693
chr14 7596670 7.10% 672898
chr15 7511510 7.36% 662426
chr16 7976770 8.83% 698095
chr17 8938970 10.74% 776542
chr18 5944550 7.40% 530556
chr19 6588960 11.24% 569919
chr20 6287710 9.76% 551508
chr21 2780130 5.95% 247141
chr22 4191290 8.25% 362968
chrX 6470530 4.15% 596761
chrY 134950 0.24% 13063
GL000009.2 880 0.44% 85
GL000194.1 5190 2.71% 475
GL000195.1 3230 1.77% 295
GL000205.2 8100 4.36% 727
GL000213.1 160 0.10% 16
GL000218.1 2510 1.56% 237
GL000219.1 7990 4.46% 722
KI270711.1 480 1.14% 43
KI270713.1 2450 6.01% 213
KI270721.1 280 0.28% 28
KI270726.1 80 0.18% 8
KI270727.1 570 0.13% 54
KI270728.1 2250 0.12% 216
KI270731.1 260 0.17% 23
KI270734.1 660 0.40% 62
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21092981 10 120 11.28 10
global segment-length histogram

Files

Filename Size md5
GPi_Shell.bw 154.22 MB 55e576daa3f59b4f0a618fec311a0f53
genomic_resource.yaml 1.09 KB cd607bf5c7ee3997c4610e98fb7e4f83
statistics/