Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/GPin-BF_Cholinergic_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for GPin-BF_Cholinergic_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: GPin-BF_Cholinergic_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_GPin-BF_Cholinergic_GABA float

johansen2025Crossspecies_atac_human_GPin-BF_Cholinergic_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_GPin-BF_Cholinergic_GABA [0.506, 290]
n
348,679,778
mean
0.67
sd
0.507

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 34867977810.59% 30176142
chr1 29495440 11.85% 2543572
chr2 28976320 11.96% 2511559
chr3 23574040 11.89% 2047772
chr4 18922550 9.95% 1664930
chr5 19646550 10.82% 1714415
chr6 20021290 11.72% 1742853
chr7 19137510 12.01% 1654631
chr8 16971050 11.69% 1475420
chr9 14719630 10.64% 1269341
chr10 16747410 12.52% 1446597
chr11 17774270 13.16% 1527321
chr12 17090710 12.82% 1476532
chr13 10014270 8.76% 880126
chr14 11560290 10.80% 995001
chr15 10670990 10.46% 919341
chr16 11797600 13.06% 1004814
chr17 13263690 15.93% 1121458
chr18 8678370 10.80% 757465
chr19 9944570 16.97% 839325
chr20 9219550 14.31% 787156
chr21 4332150 9.27% 373982
chr22 6260170 12.32% 525953
chrX 9528090 6.11% 865125
chrY 266370 0.47% 25500
GL000009.2 1920 0.95% 188
GL000194.1 9390 4.90% 821
GL000195.1 5880 3.21% 528
GL000205.2 16900 9.11% 1447
GL000213.1 260 0.16% 26
GL000218.1 4490 2.79% 405
GL000219.1 12078 6.74% 1069
KI270711.1 880 2.08% 83
KI270713.1 4060 9.96% 338
KI270721.1 410 0.41% 40
KI270726.1 40 0.09% 4
KI270727.1 690 0.15% 63
KI270728.1 8060 0.43% 768
KI270731.1 510 0.34% 48
KI270734.1 1330 0.81% 125
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30176142 8 120 11.55 10
global segment-length histogram

Files

Filename Size md5
GPin-BF_Cholinergic_GABA.bw 194.44 MB fc8c97c3b2958be1d64a3c6ea4f4e7b2
genomic_resource.yaml 1.15 KB 1583db993bf957bae3bf8e5ddfff764a
statistics/