Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/ImAstro/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for ImAstro cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: ImAstro
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_ImAstro float

johansen2025Crossspecies_atac_human_ImAstro
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_ImAstro [0.0157, 354]
n
1,687,293,307
mean
0.0688
sd
0.252

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 168729330751.26% 140212299
chr1 137000270 55.03% 11447547
chr2 139622970 57.65% 11551016
chr3 116752360 58.88% 9660506
chr4 106870000 56.18% 8766291
chr5 103487020 57.01% 8544167
chr6 100737170 58.98% 8347492
chr7 92153940 57.83% 7634982
chr8 85560040 58.95% 7074816
chr9 67995160 49.13% 5674687
chr10 79157570 59.16% 6597472
chr11 80958700 59.93% 6770839
chr12 80663880 60.52% 6707691
chr13 55884480 48.87% 4598202
chr14 54050180 50.49% 4503562
chr15 47711040 46.78% 3986921
chr16 48466030 53.65% 4078100
chr17 51965870 62.42% 4436536
chr18 44995820 55.98% 3713320
chr19 37408260 63.82% 3208441
chr20 39128560 60.72% 3277222
chr21 21147970 45.28% 1760957
chr22 23896230 47.02% 2044649
chrX 68360090 43.81% 5545057
chrY 2857010 4.99% 242570
GL000009.2 33349 16.53% 2729
GL000194.1 50800 26.53% 4350
GL000195.1 44990 24.60% 3887
GL000205.2 86100 46.39% 7533
GL000213.1 2760 1.68% 230
GL000218.1 42850 26.59% 3521
GL000219.1 80668 45.02% 6738
KI270711.1 6490 15.38% 544
KI270713.1 17560 43.10% 1547
KI270721.1 3010 3.00% 250
KI270726.1 3330 7.61% 295
KI270727.1 8380 1.87% 743
KI270728.1 70880 3.78% 5917
KI270731.1 3550 2.35% 295
KI270734.1 7970 4.83% 677
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 140212299 8 140 12.03 10
global segment-length histogram

Files

Filename Size md5
ImAstro.bw 818.67 MB ef79308d958c674702c2ea9993b7bfce
genomic_resource.yaml 1.08 KB d29b0d2edae9d1fd15d13097dc90b149
statistics/