Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/ImOligo/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for ImOligo cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: ImOligo
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_ImOligo float

johansen2025Crossspecies_atac_human_ImOligo
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_ImOligo [0.0218, 201]
n
1,392,188,267
mean
0.0779
sd
0.285

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 139218826742.30% 113970616
chr1 113261460 45.49% 9312204
chr2 114567490 47.30% 9342633
chr3 96455180 48.64% 7859741
chr4 88534790 46.54% 7179356
chr5 85544120 47.12% 6962224
chr6 82950390 48.56% 6772342
chr7 75986260 47.69% 6203345
chr8 70598760 48.64% 5742891
chr9 57043000 41.22% 4685422
chr10 65028720 48.60% 5327042
chr11 67222580 49.76% 5525279
chr12 66652660 50.01% 5457399
chr13 46112120 40.32% 3746785
chr14 44596050 41.66% 3654404
chr15 37836500 37.10% 3111816
chr16 39427690 43.64% 3262353
chr17 42953920 51.59% 3596683
chr18 37789650 47.02% 3070321
chr19 32357840 55.20% 2733663
chr20 31867350 49.45% 2619439
chr21 17979270 38.49% 1473648
chr22 19352680 38.08% 1611100
chrX 55487570 35.56% 4497999
chrY 2230180 3.90% 193053
GL000009.2 24619 12.21% 2058
GL000194.1 43050 22.48% 3590
GL000195.1 30240 16.53% 2569
GL000205.2 73760 39.74% 6189
GL000213.1 1960 1.19% 171
GL000218.1 33560 20.83% 2777
GL000219.1 60628 33.83% 4949
KI270711.1 5850 13.86% 504
KI270713.1 14310 35.12% 1240
KI270721.1 2520 2.51% 214
KI270726.1 970 2.22% 91
KI270727.1 5470 1.22% 479
KI270728.1 49230 2.63% 4127
KI270731.1 1910 1.27% 172
KI270734.1 3960 2.40% 344
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 113970616 8 150 12.22 10
global segment-length histogram

Files

Filename Size md5
ImOligo.bw 702.86 MB 5f6059cd80658a8c644f2777fbd468b6
genomic_resource.yaml 1.08 KB 3c37c96d3943920272aeb3f1ad1421f7
statistics/