Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/LAMP5-CXCL14_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for LAMP5-CXCL14_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: LAMP5-CXCL14_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_LAMP5-CXCL14_GABA float

johansen2025Crossspecies_atac_human_LAMP5-CXCL14_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_LAMP5-CXCL14_GABA [0.0522, 253]
n
1,271,619,660
mean
0.142
sd
0.291

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 127161966038.63% 104532257
chr1 106726820 42.87% 8784492
chr2 106076760 43.80% 8700460
chr3 87685710 44.22% 7187877
chr4 75935660 39.92% 6197508
chr5 77492450 42.69% 6352313
chr6 74176370 43.43% 6079286
chr7 69444010 43.58% 5694824
chr8 63264240 43.59% 5185402
chr9 52774310 38.13% 4342765
chr10 59816350 44.71% 4911582
chr11 61941230 45.85% 5118593
chr12 62000100 46.52% 5108152
chr13 40524460 35.43% 3313932
chr14 40777030 38.09% 3345454
chr15 37836920 37.10% 3106949
chr16 38881990 43.04% 3212951
chr17 41530050 49.88% 3451328
chr18 33350330 41.49% 2726181
chr19 29467480 50.27% 2464549
chr20 31542550 48.95% 2604926
chr21 15402890 32.98% 1260468
chr22 20259760 39.87% 1688701
chrX 43030470 27.58% 3546397
chrY 1460400 2.55% 128636
GL000009.2 10570 5.24% 941
GL000194.1 29410 15.36% 2428
GL000195.1 22490 12.30% 1875
GL000205.2 48840 26.32% 3943
GL000213.1 990 0.60% 90
GL000218.1 20530 12.74% 1735
GL000219.1 42100 23.49% 3454
KI270711.1 3910 9.26% 323
KI270713.1 10100 24.79% 831
KI270721.1 2000 1.99% 165
KI270726.1 590 1.35% 59
KI270727.1 3360 0.75% 299
KI270728.1 19480 1.04% 1777
KI270731.1 2400 1.59% 222
KI270734.1 4550 2.76% 389
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 104532257 10 150 12.16 10
global segment-length histogram

Files

Filename Size md5
LAMP5-CXCL14_GABA.bw 656.96 MB e675f6ab34c30e0450dd764084ff4453
genomic_resource.yaml 1.12 KB 312f6434cccb514187ecc8cc4846e0c1
statistics/