Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/LAMP5-LHX6_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for LAMP5-LHX6_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: LAMP5-LHX6_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_LAMP5-LHX6_GABA float

johansen2025Crossspecies_atac_human_LAMP5-LHX6_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_LAMP5-LHX6_GABA [0.17, 390]
n
689,632,510
mean
0.292
sd
0.387

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68963251020.95% 57256840
chr1 59003610 23.70% 4874685
chr2 57041020 23.55% 4739481
chr3 46548970 23.47% 3875400
chr4 38589470 20.29% 3245358
chr5 40927550 22.54% 3411099
chr6 39154840 22.92% 3264736
chr7 37345490 23.44% 3100260
chr8 34002580 23.43% 2827461
chr9 29038840 20.98% 2402921
chr10 32771690 24.49% 2713520
chr11 34838210 25.79% 2879794
chr12 33810830 25.37% 2801058
chr13 21199410 18.54% 1772469
chr14 22009580 20.56% 1825387
chr15 21136270 20.72% 1743573
chr16 22098890 24.46% 1814118
chr17 24273400 29.15% 1990525
chr18 17596060 21.89% 1464683
chr19 17753170 30.29% 1456814
chr20 18042640 28.00% 1480155
chr21 8241890 17.64% 683391
chr22 12156490 23.92% 987229
chrX 21550730 13.81% 1856649
chrY 391240 0.68% 36580
GL000009.2 4080 2.02% 385
GL000194.1 12580 6.57% 1063
GL000195.1 11620 6.35% 1003
GL000205.2 27930 15.05% 2291
GL000213.1 540 0.33% 54
GL000218.1 8530 5.29% 774
GL000219.1 23140 12.91% 1987
KI270711.1 2170 5.14% 187
KI270713.1 5500 13.50% 473
KI270721.1 760 0.76% 69
KI270726.1 60 0.14% 6
KI270727.1 1800 0.40% 166
KI270728.1 7590 0.41% 737
KI270731.1 1140 0.76% 107
KI270734.1 2200 1.33% 192
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57256840 10 170 12.04 10
global segment-length histogram

Files

Filename Size md5
LAMP5-LHX6_GABA.bw 309.71 MB f6555ee07bce5c5783b6f01a7affbd77
genomic_resource.yaml 1.12 KB 6beda519a91edc54d412f9c8ab47ad57
statistics/