Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Microglia/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Microglia cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Microglia
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Microglia float

johansen2025Crossspecies_atac_human_Microglia
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_Microglia [0.00287, 167]
n
2,461,928,388
mean
0.0412
sd
0.225

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 246192838874.79% 223103367
chr1 195594480 78.57% 17815257
chr2 206052510 85.08% 18653031
chr3 171866830 86.67% 15569254
chr4 161660400 84.99% 14524400
chr5 152863100 84.20% 13799286
chr6 148096440 86.70% 13439800
chr7 134763730 84.57% 12239508
chr8 124342340 85.67% 11266782
chr9 98530430 71.20% 8964543
chr10 113892350 85.12% 10330485
chr11 115153330 85.24% 10467890
chr12 116101130 87.11% 10591018
chr13 83772180 73.25% 7571458
chr14 77443450 72.35% 7045313
chr15 68218090 66.89% 6182621
chr16 67017600 74.19% 6125799
chr17 69937060 84.00% 6471821
chr18 66044840 82.17% 5996655
chr19 50051390 85.39% 4653809
chr20 54487180 84.55% 4970503
chr21 30476760 65.25% 2787796
chr22 31006420 61.01% 2859382
chrX 114792270 73.57% 9968098
chrY 9019160 15.76% 743456
GL000009.2 64950 32.20% 5487
GL000194.1 80880 42.24% 7079
GL000195.1 65700 35.92% 5845
GL000205.2 110480 59.53% 10354
GL000213.1 7560 4.60% 650
GL000218.1 74970 46.52% 6376
GL000219.1 117218 65.41% 10469
KI270711.1 13290 31.49% 1187
KI270713.1 25100 61.60% 2295
KI270721.1 7640 7.62% 668
KI270726.1 6140 14.04% 520
KI270727.1 19810 4.42% 1719
KI270728.1 130790 6.98% 11057
KI270731.1 8120 5.39% 674
KI270734.1 12270 7.43% 1022
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 223103367 8 130 11.03 10
global segment-length histogram

Files

Filename Size md5
Microglia.bw 1.2 GB ce11c13186b7913298c403ae76c6ae84
genomic_resource.yaml 1.09 KB e3f802201d3bd9185d6783b99480b956
statistics/