Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Monocyte/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Monocyte cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Monocyte
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Monocyte float

johansen2025Crossspecies_atac_human_Monocyte

RPKM?
HISTOGRAM FOR johansen2025Crossspecies_atac_human_Monocyte [1.39, 369]
n
54,839,250
mean
1.78
sd
1.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 548392501.67% 5079313
chr1 4674530 1.88% 430012
chr2 4268800 1.76% 397315
chr3 3627050 1.83% 338771
chr4 2776160 1.46% 262865
chr5 2826490 1.56% 264683
chr6 3401750 1.99% 316224
chr7 2812620 1.77% 262418
chr8 2467330 1.70% 231212
chr9 2283570 1.65% 211000
chr10 2459090 1.84% 227778
chr11 2822580 2.09% 259849
chr12 2889470 2.17% 266578
chr13 1504520 1.32% 142134
chr14 1833030 1.71% 169789
chr15 1705680 1.67% 157846
chr16 1853770 2.05% 169345
chr17 2475590 2.97% 222991
chr18 1178110 1.47% 110745
chr19 2316140 3.95% 205494
chr20 1420400 2.20% 130714
chr21 680980 1.46% 63146
chr22 1013980 2.00% 91909
chrX 1488520 0.95% 140802
chrY 46860 0.08% 4562
GL000009.2 400 0.20% 39
GL000194.1 930 0.49% 91
GL000195.1 1460 0.80% 125
GL000205.2 3620 1.95% 332
GL000213.1 60 0.04% 6
GL000218.1 480 0.30% 48
GL000219.1 2730 1.52% 255
KI270711.1 50 0.12% 5
KI270713.1 870 2.14% 75
KI270721.1 60 0.06% 6
KI270726.1 80 0.18% 8
KI270727.1 200 0.04% 19
KI270728.1 1070 0.06% 102
KI270731.1 60 0.04% 6
KI270734.1 160 0.10% 14
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5079313 10 120 10.8 10
global segment-length histogram

Files

Filename Size md5
Monocyte.bw 42.23 MB 8214144d8221cff2d9f74774e4169ab7
genomic_resource.yaml 1.09 KB 488c68f7d59086619fc81b30960a118e
statistics/