Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/OB_FRMD7_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for OB_FRMD7_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: OB_FRMD7_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_OB_FRMD7_GABA float

johansen2025Crossspecies_atac_human_OB_FRMD7_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_OB_FRMD7_GABA [0.224, 204]
n
354,249,650
mean
0.367
sd
0.535

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 35424965010.76% 30876746
chr1 30175730 12.12% 2618435
chr2 28284730 11.68% 2474910
chr3 24117390 12.16% 2111547
chr4 20196070 10.62% 1784861
chr5 20919020 11.52% 1833534
chr6 19884830 11.64% 1744567
chr7 19464480 12.22% 1696400
chr8 17633990 12.15% 1540276
chr9 14819170 10.71% 1287819
chr10 16098800 12.03% 1402497
chr11 17979180 13.31% 1556806
chr12 17204030 12.91% 1495827
chr13 11171380 9.77% 982637
chr14 11875180 11.09% 1031046
chr15 10423550 10.22% 906826
chr16 11262970 12.47% 970373
chr17 13085720 15.72% 1115646
chr18 9239880 11.50% 808234
chr19 9527610 16.25% 813237
chr20 8934400 13.86% 769774
chr21 4467930 9.57% 388439
chr22 6464890 12.72% 546710
chrX 10567690 6.77% 954085
chrY 384810 0.67% 36311
GL000009.2 3890 1.93% 364
GL000194.1 8290 4.33% 724
GL000195.1 7150 3.91% 655
GL000205.2 14580 7.86% 1267
GL000213.1 320 0.19% 31
GL000218.1 4610 2.86% 430
GL000219.1 13610 7.59% 1216
KI270711.1 740 1.75% 71
KI270713.1 4640 11.39% 400
KI270721.1 300 0.30% 28
KI270726.1 80 0.18% 8
KI270727.1 1560 0.35% 142
KI270728.1 5070 0.27% 485
KI270731.1 700 0.46% 61
KI270734.1 680 0.41% 67
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30876746 10 120 11.47 10
global segment-length histogram

Files

Filename Size md5
OB_FRMD7_GABA.bw 199.28 MB 9c5344cf19c8089fead834218acc9df2
genomic_resource.yaml 1.11 KB 52a04b03f6d439b85b8ed67a745c2cf6
statistics/