Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/OPC/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for OPC cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: OPC
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_OPC float

johansen2025Crossspecies_atac_human_OPC
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_OPC [0.00685, 81.3]
n
2,067,399,627
mean
0.0514
sd
0.228

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 206739962762.81% 178411819
chr1 166710930 66.96% 14473190
chr2 174125670 71.90% 15014258
chr3 144725010 72.98% 12475361
chr4 129902160 68.29% 11012333
chr5 126555410 69.71% 10839573
chr6 122188330 71.54% 10481051
chr7 112740510 70.75% 9722613
chr8 105155430 72.45% 9063361
chr9 83753610 60.52% 7259309
chr10 97350400 72.76% 8429107
chr11 97753230 72.36% 8491938
chr12 98229300 73.70% 8503082
chr13 68834300 60.19% 5883082
chr14 66185190 61.83% 5745704
chr15 59069970 57.92% 5124540
chr16 58600290 64.87% 5141318
chr17 60851140 73.09% 5377116
chr18 55800980 69.43% 4809955
chr19 44078130 75.20% 3917820
chr20 48027330 74.53% 4208604
chr21 25468900 54.53% 2204539
chr22 28048810 55.19% 2499592
chrX 88698150 56.84% 7354966
chrY 3982980 6.96% 331148
GL000009.2 40849 20.25% 3419
GL000194.1 60340 31.51% 5205
GL000195.1 56460 30.87% 4987
GL000205.2 94790 51.07% 8410
GL000213.1 4060 2.47% 344
GL000218.1 51500 31.96% 4302
GL000219.1 94868 52.94% 8077
KI270711.1 8490 20.11% 731
KI270713.1 20840 51.15% 1847
KI270721.1 6290 6.27% 529
KI270726.1 2240 5.12% 203
KI270727.1 12340 2.75% 1058
KI270728.1 92570 4.94% 7602
KI270731.1 5690 3.77% 480
KI270734.1 12140 7.36% 1065
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 178411819 9 140 11.59 10
global segment-length histogram

Files

Filename Size md5
OPC.bw 1000.26 MB f1913195058ef89a911f23f5b1dab698
genomic_resource.yaml 1.07 KB 9cd95da7c1eba5b7308e933c1f41167c
statistics/