Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/OT_D1_ICj/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for OT_D1_ICj cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: OT_D1_ICj
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_OT_D1_ICj float

johansen2025Crossspecies_atac_human_OT_D1_ICj
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_OT_D1_ICj [0.0658, 248]
n
1,040,185,550
mean
0.152
sd
0.316

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104018555031.60% 84993999
chr1 85902730 34.51% 7018464
chr2 85810790 35.43% 7004366
chr3 72933220 36.78% 5952477
chr4 63592740 33.43% 5199197
chr5 63105720 34.76% 5152012
chr6 60075670 35.17% 4908121
chr7 57160070 35.87% 4658749
chr8 51251190 35.31% 4183068
chr9 42133120 30.44% 3438556
chr10 48640390 36.35% 3971859
chr11 50091870 37.08% 4098993
chr12 49973910 37.50% 4077882
chr13 33820680 29.57% 2761524
chr14 33821360 31.60% 2762991
chr15 30606590 30.01% 2497142
chr16 31773400 35.17% 2591388
chr17 34488270 41.42% 2820911
chr18 26771710 33.31% 2181855
chr19 25414230 43.36% 2082856
chr20 25192200 39.09% 2055542
chr21 13028440 27.89% 1060458
chr22 16670450 32.80% 1355104
chrX 36795620 23.58% 3058879
chrY 911790 1.59% 83216
GL000009.2 9320 4.62% 841
GL000194.1 27250 14.23% 2244
GL000195.1 22100 12.08% 1872
GL000205.2 56560 30.48% 4611
GL000213.1 860 0.52% 79
GL000218.1 17080 10.60% 1437
GL000219.1 47700 26.62% 3900
KI270711.1 2800 6.63% 244
KI270713.1 8060 19.78% 674
KI270721.1 1130 1.13% 101
KI270726.1 330 0.75% 33
KI270727.1 2390 0.53% 216
KI270728.1 19130 1.02% 1709
KI270731.1 1510 1.00% 137
KI270734.1 3170 1.92% 291
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84993999 10 140 12.24 10
global segment-length histogram

Files

Filename Size md5
OT_D1_ICj.bw 569.47 MB 4b7fa50345754abf35c6c1fa8e97dc70
genomic_resource.yaml 1.09 KB 31df16a85e2fc26cc95d392f8c2b7618
statistics/