Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Oligo_OPALIN/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Oligo_OPALIN cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Oligo_OPALIN
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Oligo_OPALIN float

johansen2025Crossspecies_atac_human_Oligo_OPALIN
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_Oligo_OPALIN [0.00149, 141]
n
2,611,780,768
mean
0.0375
sd
0.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 261178076879.35% 243857440
chr1 206288320 82.86% 19338423
chr2 217478080 89.80% 20253758
chr3 181865510 91.71% 16991769
chr4 173670090 91.30% 16202299
chr5 162907760 89.74% 15213101
chr6 156311290 91.51% 14594316
chr7 142281430 89.29% 13290328
chr8 131988490 90.94% 12355955
chr9 104258910 75.33% 9768861
chr10 120788110 90.28% 11289611
chr11 121891180 90.23% 11426774
chr12 121947740 91.50% 11416463
chr13 88868490 77.71% 8288118
chr14 81643480 76.27% 7646220
chr15 72163090 70.75% 6723007
chr16 70242080 77.75% 6577904
chr17 71966030 86.44% 6767119
chr18 69779830 86.82% 6536484
chr19 51698700 88.20% 4885201
chr20 57509990 89.24% 5399672
chr21 32129350 68.78% 3017133
chr22 32563540 64.08% 3075625
chrX 129655390 83.09% 11783778
chrY 10968730 19.17% 933731
GL000009.2 94960 47.08% 8283
GL000194.1 100270 52.37% 9133
GL000195.1 71860 39.29% 6515
GL000205.2 115150 62.05% 10808
GL000213.1 10420 6.34% 884
GL000218.1 100240 62.20% 8941
GL000219.1 126308 70.49% 11656
KI270711.1 15810 37.46% 1413
KI270713.1 26760 65.68% 2498
KI270721.1 9030 9.00% 773
KI270726.1 8560 19.57% 699
KI270727.1 23670 5.28% 2067
KI270728.1 184000 9.83% 15707
KI270731.1 10280 6.82% 870
KI270734.1 17840 10.81% 1543
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 243857440 8 130 10.71 10
global segment-length histogram

Files

Filename Size md5
Oligo_OPALIN.bw 1.33 GB 76942b2e3ecab9cff4fcce412299f101
genomic_resource.yaml 1.1 KB 50e92b25e8caf2e427ccdde879e8ff39
statistics/