Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Oligo_PLEKHG1/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Oligo_PLEKHG1 cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Oligo_PLEKHG1
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Oligo_PLEKHG1 float

johansen2025Crossspecies_atac_human_Oligo_PLEKHG1
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_Oligo_PLEKHG1 [0.00335, 184]
n
2,405,233,458
mean
0.0481
sd
0.235

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 240523345873.07% 217133074
chr1 192045690 77.14% 17458437
chr2 201448440 83.18% 18176179
chr3 167482220 84.46% 15103919
chr4 157957890 83.04% 14157704
chr5 149076350 82.12% 13408164
chr6 143420650 83.97% 12913158
chr7 130893220 82.14% 11816462
chr8 120923670 83.32% 10885230
chr9 96719320 69.89% 8777783
chr10 111919630 83.65% 10124653
chr11 112950140 83.61% 10248722
chr12 112340470 84.29% 10144561
chr13 81124350 70.94% 7275377
chr14 75711000 70.73% 6864578
chr15 67846810 66.52% 6166020
chr16 66221950 73.30% 6059484
chr17 68603890 82.40% 6321543
chr18 63996610 79.62% 5769810
chr19 49310430 84.12% 4561454
chr20 53634410 83.23% 4880021
chr21 29678820 63.54% 2693348
chr22 31169590 61.34% 2888839
chrX 112190850 71.90% 9727653
chrY 7802350 13.63% 642469
GL000009.2 65180 32.31% 5500
GL000194.1 88900 46.43% 7982
GL000195.1 68690 37.56% 6163
GL000205.2 112080 60.39% 10453
GL000213.1 6900 4.20% 589
GL000218.1 82360 51.11% 7155
GL000219.1 119208 66.52% 10726
KI270711.1 15480 36.67% 1383
KI270713.1 25050 61.48% 2294
KI270721.1 6450 6.43% 553
KI270726.1 5090 11.64% 429
KI270727.1 18980 4.23% 1664
KI270728.1 129070 6.89% 10778
KI270731.1 7660 5.08% 665
KI270734.1 13610 8.25% 1172
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 217133074 8 140 11.08 10
global segment-length histogram

Files

Filename Size md5
Oligo_PLEKHG1.bw 1.18 GB e66215d469ee1b2f577ba68e0186c82e
genomic_resource.yaml 1.11 KB 5b7a7b2ecf3804a25a27606611cb2db8
statistics/