Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/Pericyte/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for Pericyte cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: Pericyte
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_Pericyte float

johansen2025Crossspecies_atac_human_Pericyte
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_Pericyte [0.0887, 370]
n
561,849,350
mean
0.176
sd
0.471

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 56184935017.07% 47649977
chr1 45542540 18.29% 3861241
chr2 46353400 19.14% 3934586
chr3 38644810 19.49% 3279787
chr4 35156480 18.48% 2990229
chr5 34091780 18.78% 2897199
chr6 33583380 19.66% 2850952
chr7 30689760 19.26% 2597211
chr8 28105760 19.36% 2381612
chr9 23122560 16.71% 1954324
chr10 26223300 19.60% 2222766
chr11 28255560 20.92% 2382753
chr12 27130710 20.36% 2300287
chr13 18449910 16.13% 1566883
chr14 17919070 16.74% 1517506
chr15 15441340 15.14% 1311468
chr16 16567580 18.34% 1397232
chr17 18274470 21.95% 1538110
chr18 14712220 18.30% 1246978
chr19 14287250 24.37% 1198794
chr20 13158260 20.42% 1111517
chr21 7607400 16.29% 638329
chr22 8668240 17.06% 724230
chrX 19031770 12.20% 1669828
chrY 696650 1.22% 64605
GL000009.2 9190 4.56% 814
GL000194.1 15550 8.12% 1325
GL000195.1 12290 6.72% 1057
GL000205.2 33720 18.17% 2695
GL000213.1 720 0.44% 67
GL000218.1 10990 6.82% 981
GL000219.1 23400 13.06% 2018
KI270711.1 1390 3.29% 117
KI270713.1 6690 16.42% 568
KI270721.1 750 0.75% 70
KI270726.1 330 0.75% 30
KI270727.1 2000 0.45% 184
KI270728.1 15690 0.84% 1404
KI270731.1 550 0.36% 51
KI270734.1 1890 1.15% 169
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47649977 10 130 11.79 10
global segment-length histogram

Files

Filename Size md5
Pericyte.bw 271.67 MB 1286924a92d69e0c1fc6d9193f82c49f
genomic_resource.yaml 1.09 KB d2cb2bbc621c8375e7b56b4357be3b8a
statistics/