Resource

Id	summary/johansen2025Crossspecies/pseudobulk_atac/human/SMC/bigwigcontent_copy
Type	position_score
Version	0
Summary	ATAC big wig for SMC cell type from human
Description
Labels	assay: 10x_Multiome brain_region: basal ganglia cell_type: SMC data_types: atac_signal dataset: johansen2025Crossspecies modalities: ATAC processing_level: RPKM_normalized reference_genome: reference/Human/genome/GRCh38.p14 resolution: pseudo_bulk_cell_type sequencing_platform: Illumina species: human vendor: 10x_Genomics

Scores (1)

ID	Type	Default annotation	Description	Histogram	Range	Summary
johansen2025Crossspecies_atac_human_SMC	float	johansen2025Crossspecies_atac_human_SMC	RPKM?		[0.421, 382]	n 195,989,238 mean 0.593 sd 0.737

n counts base pairs; sd is the population standard deviation.

Chromosome	Covered positions	Covered %	Segments
all chromosomes	195989238	5.95%	17767864
chr1	16905590	6.79%	1521546
chr2	15659260	6.47%	1427820
chr3	12884610	6.50%	1175994
chr4	10695190	5.62%	987617
chr5	10918900	6.01%	1000653
chr6	11109830	6.50%	1014141
chr7	10464370	6.57%	952511
chr8	9138870	6.30%	835623
chr9	7903230	5.71%	714341
chr10	9447720	7.06%	853360
chr11	10059640	7.45%	904678
chr12	9738040	7.31%	881084
chr13	5768560	5.04%	530416
chr14	6174000	5.77%	560071
chr15	6160420	6.04%	554539
chr16	6706380	7.42%	597093
chr17	7709240	9.26%	681037
chr18	4614760	5.74%	424078
chr19	6389210	10.90%	558586
chr20	5042250	7.82%	452378
chr21	2643520	5.66%	237961
chr22	3600840	7.09%	316921
chrX	6009700	3.85%	562266
chrY	195440	0.34%	18692
GL000009.2	1790	0.89%	172
GL000194.1	5590	2.92%	495
GL000195.1	5540	3.03%	489
GL000205.2	14790	7.97%	1285
GL000213.1	140	0.09%	14
GL000218.1	3380	2.10%	326
GL000219.1	8708	4.86%	793
KI270711.1	360	0.85%	35
KI270713.1	3190	7.83%	274
KI270721.1	360	0.36%	33
KI270726.1	60	0.14%	6
KI270727.1	830	0.19%	82
KI270728.1	4280	0.23%	391
KI270731.1	210	0.14%	21
KI270734.1	440	0.27%	42
667 contigs with no values (199185447 bp)	0	0.00%	0

	segments	min	max	mean	median
segments	17767864	8	120	11.03	10