Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/SN-VTR-HTH_GATA3-TCF7L2_GABA/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN-VTR-HTH_GATA3-TCF7L2_GABA cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN-VTR-HTH_GATA3-TCF7L2_GABA
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_SN-VTR-HTH_GATA3-TCF7L2_GABA float

johansen2025Crossspecies_atac_human_SN-VTR-HTH_GATA3-TCF7L2_GABA
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_SN-VTR-HTH_GATA3-TCF7L2_GABA [0.21, 275]
n
701,693,250
mean
0.345
sd
0.37

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 70169325021.32% 57956626
chr1 60243070 24.20% 4952130
chr2 57816500 23.87% 4779489
chr3 47972380 24.19% 3967576
chr4 39224850 20.62% 3279914
chr5 41248560 22.72% 3422147
chr6 39649840 23.21% 3289835
chr7 38176330 23.96% 3153068
chr8 34376570 23.69% 2843774
chr9 29155220 21.07% 2401660
chr10 34386470 25.70% 2827948
chr11 35538660 26.31% 2921072
chr12 33795590 25.36% 2788341
chr13 20517150 17.94% 1711748
chr14 22359490 20.89% 1846358
chr15 21756920 21.33% 1784729
chr16 22938370 25.39% 1871641
chr17 25532710 30.67% 2079852
chr18 17973350 22.36% 1487659
chr19 17754270 30.29% 1453853
chr20 18574950 28.82% 1516386
chr21 8195480 17.55% 677012
chr22 12128700 23.87% 981755
chrX 22083770 14.15% 1892346
chrY 151290 0.26% 14287
GL000009.2 2750 1.36% 254
GL000194.1 20610 10.76% 1697
GL000195.1 11120 6.08% 952
GL000205.2 32890 17.72% 2662
GL000213.1 490 0.30% 47
GL000218.1 12090 7.50% 1041
GL000219.1 32700 18.25% 2718
KI270711.1 2000 4.74% 176
KI270713.1 5260 12.91% 432
KI270721.1 870 0.87% 75
KI270726.1 20 0.05% 2
KI270727.1 2090 0.47% 187
KI270728.1 16330 0.87% 1504
KI270731.1 1050 0.70% 91
KI270734.1 2490 1.51% 208
667 contigs with no values (199185447 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57956626 10 140 12.11 10
global segment-length histogram

Files

Filename Size md5
SN-VTR-HTH_GATA3-TCF7L2_GABA.bw 312.59 MB 3ca5bac7460f1094f8b5971edf09149c
genomic_resource.yaml 1.17 KB 9b2a4a333e3692ce96e13646e0161436
statistics/