Resource

Id summary/johansen2025Crossspecies/pseudobulk_atac/human/SN-VTR_CALB1_Dopa/bigwigcontent_copy
Type position_score
Version 0
Summary ATAC big wig for SN-VTR_CALB1_Dopa cell type from human
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • cell_type: SN-VTR_CALB1_Dopa
  • data_types: atac_signal
  • dataset: johansen2025Crossspecies
  • modalities: ATAC
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/GRCh38.p14
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
johansen2025Crossspecies_atac_human_SN-VTR_CALB1_Dopa float

johansen2025Crossspecies_atac_human_SN-VTR_CALB1_Dopa
RPKM?
 HISTOGRAM FOR johansen2025Crossspecies_atac_human_SN-VTR_CALB1_Dopa [14.4, 216]
n
17,897,310
mean
15.1
sd
3.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 178973100.54% 1750819
chr1 1536980 0.62% 150025
chr2 1443400 0.60% 141468
chr3 1222060 0.62% 119721
chr4 972380 0.51% 95526
chr5 1025010 0.56% 100532
chr6 951660 0.56% 93314
chr7 983680 0.62% 96302
chr8 853760 0.59% 83765
chr9 747120 0.54% 73175
chr10 881780 0.66% 86336
chr11 954320 0.71% 93188
chr12 889960 0.67% 86982
chr13 489260 0.43% 48065
chr14 588750 0.55% 57604
chr15 553180 0.54% 54058
chr16 662220 0.73% 64422
chr17 714300 0.86% 69440
chr18 439730 0.55% 43176
chr19 516080 0.88% 49721
chr20 502580 0.78% 48978
chr21 193150 0.41% 18897
chr22 349090 0.69% 33912
chrX 399910 0.26% 39529
chrY 24300 0.04% 2420
GL000009.2 80 0.04% 8
GL000194.1 300 0.16% 29
GL000195.1 300 0.16% 30
GL000205.2 550 0.30% 55
GL000218.1 200 0.12% 20
GL000219.1 560 0.31% 56
KI270711.1 80 0.19% 8
KI270713.1 200 0.49% 20
KI270726.1 40 0.09% 4
KI270727.1 80 0.02% 7
KI270728.1 140 0.01% 14
KI270731.1 20 0.01% 2
KI270734.1 100 0.06% 10
669 contigs with no values (199450002 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 1750819 10 70 10.22 10
global segment-length histogram

Files

Filename Size md5
SN-VTR_CALB1_Dopa.bw 14.77 MB 9cabb1d39bce9fa7b7b6486b68b84fd7
genomic_resource.yaml 1.12 KB b469a8315440f1884f300992470acb88
statistics/